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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/1.000
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/0.705
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.671
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/0.644
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/0.629
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.614
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.613
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/0.611
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.611
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.611
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.607
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/0.592
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/0.592
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]/0.591
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/0.591
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/0.587
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.574
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/0.563
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]/0.562
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.558
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/0.554
3nhyA7BRibosyldihydronicotinamide dehydrogenase [quinone]/0.554
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/0.544
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.533
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.531
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.528
3nhuM42Ribosyldihydronicotinamide dehydrogenase [quinone]/0.527
3nhwZXZRibosyldihydronicotinamide dehydrogenase [quinone]/0.514
2qmyFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.450
1amoFMNNADPH--cytochrome P450 reductase/0.446
3g5mFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.443
2geuCOKPantothenate kinase2.7.1.330.440