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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3otwCOAPhosphopantetheine adenylyltransferase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3otwCOAPhosphopantetheine adenylyltransferase/1.000
2ft9CHDFatty acid-binding protein 2, liver/0.469
3hl0NADMaleylacetate reductase/0.451
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.449
1w6hTITPlasmepsin-23.4.23.390.445
4cdmFO1Deoxyribodipyrimidine photolyase/0.444
1culFOKAdenylate cyclase type 2/0.443
1culFOKAdenylate cyclase type 5/0.443
4i5vB4PDiadenosine 5',5'''-P1,P4-tetraphosphate phosphorylase 2/0.442