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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3oabDSTGeranyl diphosphate synthase large subunit

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3oabDSTGeranyl diphosphate synthase large subunit/1.000
3krfDSTGeranyl diphosphate synthase large subunit/0.594
4lfvYS4Farnesyl pyrophosphate synthase2.5.1.100.543
3krfIPEGeranyl diphosphate synthase large subunit/0.542
2f94BFQFarnesyl pyrophosphate synthase2.5.1.100.523
3ldwZOLFarnesyl pyrophosphate synthase, putative/0.522
4q23RISFarnesyl pyrophosphate synthase2.5.1.100.506
4kqsRISFarnesyl pyrophosphate synthase2.5.1.100.497
3dyh721Farnesyl pyrophosphate synthase/0.490
2i191BYFarnesyl pyrophosphate synthase/0.488
3rbmB73Farnesyl pyrophosphate synthase, putative/0.486
1rqjRISFarnesyl diphosphate synthase2.5.1.100.478
3egt722Farnesyl pyrophosphate synthase/0.474
4lfgIPEPutative geranyltranstransferase/0.471
3rywK9HFarnesyl pyrophosphate synthase, putative/0.470
1yv5RISFarnesyl pyrophosphate synthase2.5.1.100.467
4nkeRISFarnesyl pyrophosphate synthase2.5.1.100.461
2z4zSC0Geranylgeranyl pyrophosphate synthase/0.443
4dwb0M7Farnesyl pyrophosphate synthase/0.443
4kqsIPEFarnesyl pyrophosphate synthase2.5.1.100.443