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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/1.000
3nhpHGZRibosyldihydronicotinamide dehydrogenase [quinone]/0.635
3ox34X4Ribosyldihydronicotinamide dehydrogenase [quinone]/0.621
3owxXRARibosyldihydronicotinamide dehydrogenase [quinone]/0.617
3ox1695Ribosyldihydronicotinamide dehydrogenase [quinone]/0.616
4zvmDM2Ribosyldihydronicotinamide dehydrogenase [quinone]/0.614
4fgj1PQRibosyldihydronicotinamide dehydrogenase [quinone]/0.611
3nhyA7BRibosyldihydronicotinamide dehydrogenase [quinone]/0.608
3nhfVVVRibosyldihydronicotinamide dehydrogenase [quinone]/0.605
3nhjA2ZRibosyldihydronicotinamide dehydrogenase [quinone]/0.598
3nhkVAPRibosyldihydronicotinamide dehydrogenase [quinone]/0.594
4gqiM49Ribosyldihydronicotinamide dehydrogenase [quinone]/0.589
3nfrEWQRibosyldihydronicotinamide dehydrogenase [quinone]/0.588
4gr9372Ribosyldihydronicotinamide dehydrogenase [quinone]/0.586
3nhrRZWRibosyldihydronicotinamide dehydrogenase [quinone]/0.578
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.575
3ox279XRibosyldihydronicotinamide dehydrogenase [quinone]/0.567
3nhlYTRRibosyldihydronicotinamide dehydrogenase [quinone]/0.566
3uxhUXHRibosyldihydronicotinamide dehydrogenase [quinone]/0.566
1xi2CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.564
3uxe465Ribosyldihydronicotinamide dehydrogenase [quinone]/0.549
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.548
3nhuM42Ribosyldihydronicotinamide dehydrogenase [quinone]/0.547
2qmzLDPRibosyldihydronicotinamide dehydrogenase [quinone]/0.532
3gamMXXRibosyldihydronicotinamide dehydrogenase [quinone]/0.528
4qohSTLRibosyldihydronicotinamide dehydrogenase [quinone]/0.523
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.521
3nhwZXZRibosyldihydronicotinamide dehydrogenase [quinone]/0.504
3g5mFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.469
4zvlFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.461
4a30QMIGlycylpeptide N-tetradecanoyltransferase/0.452
2yczI32Beta-1 adrenergic receptor/0.450
2y01Y00Beta-1 adrenergic receptor/0.448
2ycyP32Beta-1 adrenergic receptor/0.447
1nquRDL6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.446
1mkdZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.445
4bfyZVYPantothenate kinase2.7.1.330.445
4qa2SHHHistone deacetylase 83.5.1.980.445
2ycwCAUBeta-1 adrenergic receptor/0.443
4amjCVDBeta-1 adrenergic receptor/0.443
3v94WYQPhosphodiesterase/0.441
3e5aVX6Aurora kinase A2.7.11.10.440
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.440