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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3nyaJTZBeta-2 adrenergic receptor

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3nyaJTZBeta-2 adrenergic receptor/1.000
3d4sTIMBeta-2 adrenergic receptor/0.618
3ny9JSZBeta-2 adrenergic receptor/0.618
5jqhCAUBeta-2 adrenergic receptor/0.601
2rh1CAUBeta-2 adrenergic receptor/0.597
5d6lCAUBeta-2 adrenergic receptor/0.593
5d5aCAUBeta-2 adrenergic receptor/0.565
2ycxP32Beta-1 adrenergic receptor/0.564
5d5bCAUBeta-2 adrenergic receptor/0.564
3ny8JRZBeta-2 adrenergic receptor/0.556
4ldeP0GBeta-2 adrenergic receptor/0.541
2yczI32Beta-1 adrenergic receptor/0.537
3sn6P0GBeta-2 adrenergic receptor/0.534
5a8eXTKBeta-1 adrenergic receptor/0.532
4amjCVDBeta-1 adrenergic receptor/0.531
2ycyP32Beta-1 adrenergic receptor/0.531
4gbrCAUBeta-2 adrenergic receptor/0.529
4amiG90Beta-1 adrenergic receptor/0.521
4bvnP32Beta-1 adrenergic receptor/0.518
5f8uP32Beta-1 adrenergic receptor/0.518
2ycwCAUBeta-1 adrenergic receptor/0.516
4ldlXQCBeta-2 adrenergic receptor/0.513
2y0468HBeta-1 adrenergic receptor/0.496
2y02WHJBeta-1 adrenergic receptor/0.491
2y035FWBeta-1 adrenergic receptor/0.491
3p0gP0GBeta-2 adrenergic receptor/0.480
2y01Y00Beta-1 adrenergic receptor/0.479
2vt4P32Beta-1 adrenergic receptor/0.466
4iarERM5-hydroxytryptamine receptor 1B/0.445