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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3ntdFADFAD-dependent pyridine nucleotide-disulphide oxidoreductase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3ntdFADFAD-dependent pyridine nucleotide-disulphide oxidoreductase/1.000
4ocgFADFAD-dependent pyridine nucleotide-disulphide oxidoreductase/0.761
3ntaFADFAD-dependent pyridine nucleotide-disulphide oxidoreductase/0.741
3nt6FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase/0.652
3ictFADCoenzyme A disulfide reductase/0.551
3icsFADCoenzyme A disulfide reductase/0.531
3icrFADCoenzyme A disulfide reductase/0.499
4eqwFADCoenzyme A disulfide reductase/0.489
4nevFADTrypanothione reductase/0.462
4emwFADCoenzyme A disulfide reductase/0.461
2wbaFADTrypanothione reductase1.8.1.120.453
1tytFADTrypanothione reductase1.8.1.120.448
2jk6FADTrypanothione reductase/0.440