sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3nt2 | NAD | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase | 1.1.1.18 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 3nt2 | NAD | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase | 1.1.1.18 | 1.000 | |
| 3nt5 | NAI | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase | 1.1.1.18 | 0.640 | |
| 3nt4 | NAI | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase | 1.1.1.18 | 0.588 | |
| 4l8v | NAP | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase | 1.1.1.18 | 0.545 | |
| 3ec7 | NAD | Inositol 2-dehydrogenase | / | 0.536 | |
| 3ntr | NAD | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase | 1.1.1.18 | 0.498 | |
| 4xnw | 2ID | P2Y purinoceptor 1 | / | 0.468 | |
| 3m2t | NAD | Probable dehydrogenase | / | 0.467 | |
| 3ukf | GDU | UDP-galactopyranose mutase | / | 0.460 | |
| 3g0b | T22 | Dipeptidyl peptidase 4 | / | 0.454 | |
| 5a04 | NDP | Glucose-fructose oxidoreductase | / | 0.454 | |
| 2jn3 | JN3 | Fatty acid-binding protein, liver | / | 0.452 | |
| 4zwe | DGT | Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 | 3.1.5 | 0.452 | |
| 3cis | ATP | Universal stress protein Rv2623 | / | 0.450 | |
| 5bur | ATP | 2-succinylbenzoate--CoA ligase | / | 0.450 | |
| 4c13 | UML | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase | / | 0.449 | |
| 1h6b | NDP | Glucose--fructose oxidoreductase | 1.1.99.28 | 0.448 | |
| 3hgg | CHD | CmeR | / | 0.448 | |
| 3v0p | 4GW | Histo-blood group ABO system transferase | / | 0.447 | |
| 1nec | FMN | Oxygen-insensitive NAD(P)H nitroreductase | 1 | 0.446 | |
| 3c8b | ARG_ARG_GLY_ILE_NH2 | Botulinum neurotoxin type A | 3.4.24.69 | 0.446 | |
| 5a02 | NAP | Glucose-fructose oxidoreductase | / | 0.446 | |
| 1o9b | NAI | Quinate/shikimate dehydrogenase | / | 0.445 | |
| 3fkt | SII | Beta-secretase 1 | 3.4.23.46 | 0.445 | |
| 4qfy | DCP | Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 | 3.1.5 | 0.445 | |
| 2ges | COK | Pantothenate kinase | 2.7.1.33 | 0.441 | |
| 4rnw | FMN | NADPH dehydrogenase 1 | 1.6.99.1 | 0.441 | |
| 4zgs | NAD | Putative D-lactate dehydrogenase | / | 0.441 | |
| 2jgb | MGT | Eukaryotic translation initiation factor 4E type 2 | / | 0.440 |