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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3nj0PYVAbscisic acid receptor PYL2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3nj0PYVAbscisic acid receptor PYL2/1.000
3nr4PYVAbscisic acid receptor PYL2/0.608
3ns2PYVAbscisic acid receptor PYL2/0.604
3nmpPYVAbscisic acid receptor PYL2/0.584
3nmhPYVAbscisic acid receptor PYL2/0.551
3njoP2MAbscisic acid receptor PYR1/0.516
4lg5A1OAbscisic acid receptor PYL2/0.512
4dscA8SAbscisic acid receptor PYL3/0.510
3kb0A8SAbscisic acid receptor PYL2/0.508
3ujlA8SAbscisic acid receptor PYL2/0.507
3negPYVAbscisic acid receptor PYL1/0.490
3njoPYVAbscisic acid receptor PYR1/0.475
3ojiPYVAbscisic acid receptor PYL3/0.474
4jdaA9SAbscisic acid receptor PYL3/0.471
3kdiA8SAbscisic acid receptor PYL2/0.468
4ds8A8SAbscisic acid receptor PYL3/0.459
4oicA8SBet v I allergen-like/0.450
3nmnPYVAbscisic acid receptor PYL1/0.440