scPDB - Distribution of Binding site Similarity values of 3nf8 entry / Site 4

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3nf8	CDQ	Gag-Pol polyprotein

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
3nf8	CDQ	Gag-Pol polyprotein	/	1.000
3d8v	UD1	Bifunctional protein GlmU	/	0.452
4ezk	0SD	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform	2.7.1.153	0.449
2uag	UMA	UDP-N-acetylmuramoylalanine--D-glutamate ligase	6.3.2.9	0.448
3zhq	TPP	Multifunctional 2-oxoglutarate metabolism enzyme	1.2.4.2	0.446