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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3nbpJGZGag-Pol polyprotein2.7.7.49

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3nbpJGZGag-Pol polyprotein2.7.7.491.000
3m8qDJZGag-Pol polyprotein2.7.7.490.559
3m8p65BGag-Pol polyprotein2.7.7.490.511
3ffi3OBGag-Pol polyprotein2.7.7.490.504
3is9AC7Gag-Pol polyprotein2.7.7.490.497
3irxUDRGag-Pol polyprotein2.7.7.490.481
2ze2T27Gag-Pol polyprotein2.7.7.490.472
4i2q1BTGag-Pol polyprotein2.7.7.490.470
1rt2TNKGag-Pol polyprotein2.7.7.490.464
3i0rRT3Gag-Pol polyprotein2.7.7.490.464
3mec65BGag-Pol polyprotein2.7.7.490.454
1eetBFUGag-Pol polyprotein2.7.7.490.447
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.447
3dleGFAGag-Pol polyprotein2.7.7.490.444
2y46MIVMycinamicin IV hydroxylase/epoxidase/0.442
3i0sRT7Gag-Pol polyprotein2.7.7.490.441
4aw3MYVMycinamicin IV hydroxylase/epoxidase/0.441
3sgtP09Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)/0.440