sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3n19 | FNR | Xenobiotic reductase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 3n19 | FNR | Xenobiotic reductase | / | 1.000 | |
| 4utl | FNR | Xenobiotic reductase | / | 0.543 | |
| 4utk | FNR | Xenobiotic reductase | / | 0.529 | |
| 3l5l | FMN | Xenobiotic reductase | / | 0.501 | |
| 4a3u | FMN | NADH:flavin oxidoreductase/NADH oxidase | / | 0.497 | |
| 1h50 | FMN | Pentaerythritol tetranitrate reductase | / | 0.484 | |
| 4tmb | FMN | Old yellow enzyme | / | 0.479 | |
| 1icp | FMN | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.477 | |
| 3hgs | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.476 | |
| 1icq | FMN | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.469 | |
| 3hgo | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.469 | |
| 3p74 | FMN | Pentaerythritol tetranitrate reductase | / | 0.468 | |
| 4b5n | FMN | NAD(P)H:flavin oxidoreductase Sye4 | / | 0.468 | |
| 1vyr | FMN | Pentaerythritol tetranitrate reductase | / | 0.466 | |
| 3f03 | FMN | Pentaerythritol tetranitrate reductase | / | 0.465 | |
| 3p84 | FMN | Pentaerythritol tetranitrate reductase | / | 0.462 | |
| 2hs8 | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.460 | |
| 1z44 | FMN | NADPH dehydrogenase | / | 0.454 | |
| 2q3o | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.454 | |
| 1h63 | FMN | Pentaerythritol tetranitrate reductase | / | 0.452 | |
| 3p8i | FMN | Pentaerythritol tetranitrate reductase | / | 0.451 | |
| 1ics | FMN | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.450 | |
| 3n14 | FMN | Xenobiotic reductase | / | 0.450 | |
| 3hgr | FMN | 12-oxophytodienoate reductase 1 | 1.3.1.42 | 0.448 | |
| 2abb | FMN | Pentaerythritol tetranitrate reductase | / | 0.447 | |
| 3p8j | FMN | Pentaerythritol tetranitrate reductase | / | 0.447 | |
| 4jic | FMN | GTN Reductase | / | 0.447 | |
| 1q45 | FMN | 12-oxophytodienoate reductase 3 | 1.3.1.42 | 0.444 | |
| 1qjf | ACS | Isopenicillin N synthase | 1.21.3.1 | 0.442 |