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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3mhtSAHModification methylase HhaI2.1.1.37

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
3mhtSAHModification methylase HhaI2.1.1.371.000
2zcjSAHModification methylase HhaI2.1.1.370.675
2z6uSAHModification methylase HhaI2.1.1.370.651
8mhtSAHModification methylase HhaI2.1.1.370.618
1skmSAHModification methylase HhaI2.1.1.370.591
7mhtSAHModification methylase HhaI2.1.1.370.580
2uyhSAHModification methylase HhaI2.1.1.370.579
1mhtSAHModification methylase HhaI2.1.1.370.576
2i9kSAHModification methylase HhaI2.1.1.370.569
5mhtSAHModification methylase HhaI2.1.1.370.564
9mhtSAHModification methylase HhaI2.1.1.370.548
2c7qSAHModification methylase HhaI2.1.1.370.545
1fjxSAHModification methylase HhaI2.1.1.370.541
4mhtSAHModification methylase HhaI2.1.1.370.513
10mhSAHModification methylase HhaI2.1.1.370.508
2hmySAMModification methylase HhaI2.1.1.370.462