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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3m8qDJZGag-Pol polyprotein2.7.7.49

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3m8qDJZGag-Pol polyprotein2.7.7.491.000
3nbpJGZGag-Pol polyprotein2.7.7.490.602
3ffi3OBGag-Pol polyprotein2.7.7.490.581
3mec65BGag-Pol polyprotein2.7.7.490.577
2ze2T27Gag-Pol polyprotein2.7.7.490.561
4i2q1BTGag-Pol polyprotein2.7.7.490.554
3med65BGag-Pol polyprotein2.7.7.490.541
3m8p65BGag-Pol polyprotein2.7.7.490.536
1c1bGCAGag-Pol polyprotein2.7.7.490.532
3irxUDRGag-Pol polyprotein2.7.7.490.531
4i7fNVEGag-Pol polyprotein2.7.7.490.507
3is9AC7Gag-Pol polyprotein2.7.7.490.505
3meeT27Gag-Pol polyprotein2.7.7.490.503
4i2pG73Gag-Pol polyprotein2.7.7.490.501
3qlhT27Gag-Pol polyprotein2.7.7.490.496
3lanKBTGag-Pol polyprotein2.7.7.490.495
3megT27Gag-Pol polyprotein2.7.7.490.494
3dleGFAGag-Pol polyprotein2.7.7.490.491
1s9eADBGag-Pol polyprotein2.7.7.490.490
1rt2TNKGag-Pol polyprotein2.7.7.490.481
1eetBFUGag-Pol polyprotein2.7.7.490.480
3lamKRPGag-Pol polyprotein2.7.7.490.480
3i0rRT3Gag-Pol polyprotein2.7.7.490.478
3sgtP09Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)/0.476
1rt4UC1Gag-Pol polyprotein2.7.7.490.470
1jlaTNKGag-Pol polyprotein2.7.7.490.469
1klmSPPGag-Pol polyprotein2.7.7.490.467
3i0sRT7Gag-Pol polyprotein2.7.7.490.467
1tl3H20Gag-Pol polyprotein2.7.7.490.466
4ig3T27Gag-Pol polyprotein2.7.7.490.464
1hpzAAPGag-Pol polyprotein2.7.7.490.459
1tvrTB9Gag-Pol polyprotein2.7.7.490.457
1tl1H18Gag-Pol polyprotein2.7.7.490.454
3dmjGWEPol protein/0.454
1ikyMSDGag-Pol polyprotein2.7.7.490.452
2hnzPC0Gag-Pol polyprotein2.7.7.490.451
2vg7NNIGag-Pol polyprotein2.7.7.490.451
1i7iAZ2Peroxisome proliferator-activated receptor gamma/0.450
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.450
2rf2MRXGag-Pol polyprotein2.7.7.490.449
3c0g3AMPeripheral plasma membrane protein CASK2.7.11.10.446
4lsl1YQGag-Pol polyprotein2.7.7.490.446
3vt8YI3Vitamin D3 receptor/0.445
1s1vTNKGag-Pol polyprotein2.7.7.490.444
1s6qTPBGag-Pol polyprotein2.7.7.490.440
5br4NADLactaldehyde reductase1.1.1.770.440