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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3m1fATPActin, alpha skeletal muscle

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3m1fATPActin, alpha skeletal muscle/1.000
2q36ATPActin, alpha skeletal muscle/0.606
5ce3ATPActin/0.603
1mduATPActin, alpha skeletal muscle/0.602
4k42ADPActin, alpha skeletal muscle/0.591
4pkiATPActin, alpha skeletal muscle/0.584
1h1vATPActin, alpha skeletal muscle/0.583
3tu5ATPActin, alpha skeletal muscle/0.579
1rgiATPActin, alpha skeletal muscle/0.572
3m6gATPActin, alpha skeletal muscle/0.567
3ffkATPActin, alpha skeletal muscle/0.566
4cbxATPActin-2/0.565
3mn6ATPActin-5C/0.564
1c0fATPMajor actin/0.563
1lotATPActin, alpha skeletal muscle/0.559
1nmdATPMajor actin/0.558
1t44ATPActin, alpha skeletal muscle/0.556
3a5mATPMajor actin/0.555
3w3dATPActin, gamma-enteric smooth muscle/0.552
2v51ATPActin, alpha skeletal muscle/0.550
4pl8ATPActin, alpha skeletal muscle/0.549
3el2ATPActin-5C/0.548
1kxpATPActin, alpha skeletal muscle/0.546
1s22ATPActin, alpha skeletal muscle/0.542
1yxqATPActin, alpha skeletal muscle/0.542
3u9dATPActin, alpha skeletal muscle/0.542
4pkgATPActin, alpha skeletal muscle/0.539
1eqyATPActin, alpha skeletal muscle/0.536
4jhdANPActin-5C/0.536
4ci6ATPActin/0.533
1qz5ATPActin, alpha skeletal muscle/0.530
4pkhADPActin, alpha skeletal muscle/0.524
3mn9ATPActin-5C/0.523
1nm1ATPMajor actin/0.516
3a5oATPMajor actin/0.513
1dejATPMajor actin/0.511
3u4lATPActin, cytoplasmic 1/0.511
4k43ADPActin, alpha skeletal muscle/0.509
2q97ATPActin, alpha skeletal muscle/0.507
1ijjATPActin, alpha skeletal muscle/0.500
4m63ATPActin-5C/0.500
3eksATPActin-5C/0.492
2a41ATPActin, alpha skeletal muscle/0.491
3mn7ATPActin-5C/0.490
4k41ATPActin, alpha skeletal muscle/0.480
4rwtANPActin-5C/0.479
3dawATPActin, alpha skeletal muscle/0.444