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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3m12FADMonomeric sarcosine oxidase1.5.3.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3m12FADMonomeric sarcosine oxidase1.5.3.11.000
3m13FADMonomeric sarcosine oxidase1.5.3.10.632
3m0oFADMonomeric sarcosine oxidase1.5.3.10.545
3vqrFADPutative oxidoreductase/0.473
2rgoFADAlpha-Glycerophosphate Oxidase/0.462
2du8FADD-amino-acid oxidase1.4.3.30.461
2e48FADD-amino-acid oxidase1.4.3.30.457
1ryiFADGlycine oxidase1.4.3.190.447
3if9FADGlycine oxidase1.4.3.190.447
1kifFADD-amino-acid oxidase1.4.3.30.440