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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3m0iZSTAldose reductase1.1.1.21

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
3m0iZSTAldose reductase1.1.1.211.000
3mb9ZSTAldose reductase1.1.1.210.693
3mc5393Aldose reductase1.1.1.210.690
3lenZSTAldose reductase1.1.1.210.658
2pdxZSTAldose reductase1.1.1.210.648
2hvoZSTAldose reductase1.1.1.210.645
2pdh47DAldose reductase1.1.1.210.644
1t40ID5Aldose reductase1.1.1.210.637
3m4h388Aldose reductase1.1.1.210.631
2dv0ZSTAldose reductase1.1.1.210.630
1z3n3NAAldose reductase1.1.1.210.627
2pdbZSTAldose reductase1.1.1.210.626
3lboLDTAldose reductase1.1.1.210.626
4gca2X9Aldose reductase1.1.1.210.625
3lqlLDTAldose reductase1.1.1.210.622
2pdmZSTAldose reductase1.1.1.210.619
2pd5ZSTAldose reductase1.1.1.210.618
3m64393Aldose reductase1.1.1.210.617
2hvnZSTAldose reductase1.1.1.210.616
2pdp393Aldose reductase1.1.1.210.615
1pwlBFIAldose reductase1.1.1.210.614
1z8962PAldose reductase1.1.1.210.611
1frbZSTAldose reductase-related protein 2/0.610
3ghrLDTAldose reductase1.1.1.210.610
2hv5ZSTAldose reductase1.1.1.210.606
2duxZSTAldose reductase1.1.1.210.605
2fz9ZSTAldose reductase1.1.1.210.602
2pdc393Aldose reductase1.1.1.210.602
2i16LDTAldose reductase1.1.1.210.598
2pdg47DAldose reductase1.1.1.210.598
2fz8ZSTAldose reductase1.1.1.210.594
2ikj393Aldose reductase1.1.1.210.592
2pzn393Aldose reductase1.1.1.210.591
3ghuLDTAldose reductase1.1.1.210.591
3t423T4Aldose reductase1.1.1.210.591
1us0LDTAldose reductase1.1.1.210.590
1t41ID5Aldose reductase1.1.1.210.588
3ghtLDTAldose reductase1.1.1.210.587
4yu153NAldose reductase1.1.1.210.587
3g5eQ74Aldose reductase1.1.1.210.586
2pdiZSTAldose reductase1.1.1.210.585
3ld5LDTAldose reductase1.1.1.210.584
2pdfZSTAldose reductase1.1.1.210.583
2i17LDTAldose reductase1.1.1.210.582
3ghsLDTAldose reductase1.1.1.210.581
3lz5LDTAldose reductase1.1.1.210.580
1ieiZESAldose reductase1.1.1.210.570
2iki388Aldose reductase1.1.1.210.570
2qxwLDTAldose reductase1.1.1.210.566
2duzZSTAldose reductase1.1.1.210.563
2pdn47DAldose reductase1.1.1.210.557
2ikhLITAldose reductase1.1.1.210.550
2pdj393Aldose reductase1.1.1.210.549
2pdlTOLAldose reductase1.1.1.210.542
2pdq47DAldose reductase1.1.1.210.540
2fzdTOLAldose reductase1.1.1.210.538
1zuaTOLAldo-keto reductase family 1 member B101.1.10.532
1ah3TOLAldose reductase1.1.1.210.522
2pdu393Aldose reductase1.1.1.210.513
2aovC2MHistamine N-methyltransferase2.1.1.80.506
3akn11DFatty acid-binding protein, intestinal/0.493
1v08NTZ4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase 1, chloroplastic3.2.1.1820.490
1e1fPSG4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase 1, chloroplastic3.2.1.1820.487
2fzbTOLAldose reductase1.1.1.210.485
2xufTZ4Acetylcholinesterase3.1.1.70.485
2yneYNEGlycylpeptide N-tetradecanoyltransferase/0.483
2qimZEAClass 10 plant pathogenesis-related protein/0.481
4paaTHGDimethylglycine dehydrogenase, mitochondrial1.5.8.40.481
2cekN8TAcetylcholinesterase3.1.1.70.480
2v0mKLNCytochrome P450 3A4/0.479
1zgbA1EAcetylcholinesterase3.1.1.70.478
4b13X25Glycylpeptide N-tetradecanoyltransferase/0.478
4uy6SAHHistidine N-alpha-methyltransferase/0.477
2xuhTZ4Acetylcholinesterase3.1.1.70.475
1kyvRBF6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.474
4xwtU5PRibonuclease J/0.474
5liu388Aldo-keto reductase family 1 member B101.1.10.473
4bfyZVYPantothenate kinase2.7.1.330.472
1el3I84Aldose reductase1.1.1.210.470
2cbqTH2Neocarzinostatin/0.470
3aiqHBO4-hydroxy-7-methoxy-3-oxo-3,4-dihydro-2H-1,4-benzoxazin-2-yl glucoside beta-D-glucosidase 1b, chloroplastic3.2.1.1820.470
3uzxAOX3-oxo-5-beta-steroid 4-dehydrogenase/0.470
1pj7FFODimethylglycine oxidase1.5.3.100.469
4f0rMTA5-methylthioadenosine/S-adenosylhomocysteine deaminase/0.469
4wevSUZAldo-keto reductase family 1 member B101.1.10.469
2xujTZ5Acetylcholinesterase3.1.1.70.468
2xupTZ5Acetylcholinesterase3.1.1.70.468
3tfjTHGDimethylsulfonioproprionate demethylase DmdA2.1.1.2690.468
4kmzFOLFolate receptor beta/0.468
1y60H4M5,6,7,8-tetrahydromethanopterin hydro-lyase4.2.1.1470.466
1ygjRMCPyridoxal kinase2.7.1.350.466
1zklIBMHigh affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7A3.1.4.530.466
1h42FADFerredoxin--NADP reductase1.18.1.20.465
2oazI96Methionine aminopeptidase 2/0.465
2xuqTZ4Acetylcholinesterase3.1.1.70.464
2y1w849Histone-arginine methyltransferase CARM1/0.464
3pqbVGPPutative oxidoreductase/0.464
4jsr1NQNAD-dependent protein deacetylase sirtuin-3, mitochondrial3.5.10.464
1ekoI84Aldose reductase1.1.1.210.463
1esmCOAPantothenate kinase2.7.1.330.463
2aot2PMHistamine N-methyltransferase2.1.1.80.462
3ghvGHCDihydrofolate reductase1.5.1.30.462
3hiiPNTAmiloride-sensitive amine oxidase [copper-containing]/0.462
3jsxCC2NAD(P)H dehydrogenase [quinone] 11.6.5.20.462
4nwiCTN7-methylguanosine phosphate-specific 5'-nucleotidase/0.462
1ddtAPUDiphtheria toxin/0.461
3c49KU8Poly [ADP-ribose] polymerase 32.4.2.300.461
3g4iD71cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.461
4b117I1Glycylpeptide N-tetradecanoyltransferase/0.461
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.461
4hf415HcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.461
4hmn16JAldo-keto reductase family 1 member C3/0.461
4li61XOTankyrase-12.4.2.300.461
1umlFR4Adenosine deaminase3.5.4.40.460
2fm5M99cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.460
3vf60H6Glucokinase2.7.1.20.460
4e2yJHZMethyltransferase/0.460
2ycxP32Beta-1 adrenergic receptor/0.460
4u140HKMuscarinic acetylcholine receptor M3/0.460
1jf0CZHObelin/0.459
1nquRDL6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.459
1p91SAM23S rRNA (guanine(745)-N(1))-methyltransferase/0.459
1aquESTEstrogen sulfotransferase, testis isoform2.8.2.40.458
1i5rHYCEstradiol 17-beta-dehydrogenase 11.1.1.620.458
1q23FUAChloramphenicol acetyltransferase2.3.1.280.458
1xorZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.458
2ea4F79Methionine aminopeptidase 2/0.458
2hzqSTRApolipoprotein D/0.458
2xuoTZ4Acetylcholinesterase3.1.1.70.458
3g4gD71cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.458
3h3r14HCollagen type IV alpha-3-binding protein/0.458
4b144XBGlycylpeptide N-tetradecanoyltransferase/0.458
4f1l0RYPoly [ADP-ribose] polymerase 142.4.2.300.458
1o6qR17Squalene--hopene cyclase4.2.1.1290.457
1odcA8BAcetylcholinesterase3.1.1.70.457
1w6jR71Lanosterol synthase5.4.99.70.457
3f3y4OABile salt sulfotransferase2.8.2.140.457
3v94WYQPhosphodiesterase/0.457
4a959MTGlycylpeptide N-tetradecanoyltransferase/0.457
4k88HFGBifunctional glutamate/proline--tRNA ligase6.1.1.150.457
1xoqROFcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.456
2i65NADADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 13.2.2.60.456
3ojxFMNNADPH--cytochrome P450 reductase/0.456
4b65NDPL-ornithine N(5)-monooxygenase/0.456
1o6rR19Squalene--hopene cyclase4.2.1.1290.455
1ry0PG2Aldo-keto reductase family 1 member C3/0.455
2aouCQAHistamine N-methyltransferase2.1.1.80.455
3c1kT15Prothrombin3.4.21.50.455
3x04GNPPhosphatidylinositol 5-phosphate 4-kinase type-2 beta2.7.1.1490.455
3ny8JRZBeta-2 adrenergic receptor/0.455
2xuiTZ5Acetylcholinesterase3.1.1.70.454
3n0hTOPDihydrofolate reductase1.5.1.30.454
3o73O73Ribosyldihydronicotinamide dehydrogenase [quinone]/0.454
4tvj09LPoly [ADP-ribose] polymerase 22.4.2.300.454
2f3815MAldo-keto reductase family 1 member C3/0.453
2oymMNIEndoglycoceramidase II/0.453
3djlFADPutative acyl-CoA dehydrogenase AidB1.3.990.453
4bfvZVVPantothenate kinase2.7.1.330.453
4hyf1AKTankyrase-22.4.2.300.453
4jt81NRNAD-dependent protein deacetylase sirtuin-3, mitochondrial3.5.10.453
4zm6ACON-acetyl-beta-D glucosaminidase/0.453
1dtpAPUDiphtheria toxin/0.452
1ndzFR5Adenosine deaminase3.5.4.40.452
1x8lOXRRetinol dehydratase/0.452
2aotSAHHistamine N-methyltransferase2.1.1.80.452
2wu4HBPAcetylcholinesterase3.1.1.70.452
2xukTZ5Acetylcholinesterase3.1.1.70.452
3ch6311Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.452
3x025GPPhosphatidylinositol 5-phosphate 4-kinase type-2 beta2.7.1.1490.452
4bfxZVXPantothenate kinase2.7.1.330.452
4dk70KSOxysterols receptor LXR-beta/0.452
4fam0SZAldo-keto reductase family 1 member C3/0.452
5kf9ACOPredicted acetyltransferase/0.452
1pj6FOLDimethylglycine oxidase1.5.3.100.451
1ry8RUTAldo-keto reductase family 1 member C3/0.451
2ouu35GcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.451
3hggCHDCmeR/0.451
3hxeBD8Geranylgeranyl transferase type-2 subunit beta2.5.1.600.451
3rj0BLDProtein BRASSINOSTEROID INSENSITIVE 12.7.10.10.451
4c1iEH9cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.451
4c2z646Glycylpeptide N-tetradecanoyltransferase 1/0.451
1qv0CZHObelin/0.450
1s9dAFBCytohesin-2/0.450
1s9dAFBADP-ribosylation factor 1/0.450
1zg32HIIsoflavone 4'-O-methyltransferase/0.450
2f98NGVAklanonic acid methyl ester cyclase AcmA5.5.1.230.450
3r8hZOMAldo-keto reductase family 1 member C3/0.450
3w0uHPWLactoylglutathione lyase4.4.1.50.450
1h22E10Acetylcholinesterase3.1.1.70.449
1ut6A8NAcetylcholinesterase3.1.1.70.449
1zknIBMcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.449
2b01TUDPhospholipase A2, major isoenzyme3.1.1.40.449
2d06ESTSulfotransferase 1A12.8.2.10.449
2jf6S55Strictosidine-O-beta-D-glucosidase3.2.1.1050.449
2nvcITAAldose reductase1.1.1.210.449
4bbhYBNGlycylpeptide N-tetradecanoyltransferase/0.449
4bj9UHBTankyrase-22.4.2.300.449
4ga8SBIAldo-keto reductase family 1 member B101.1.10.449
1drfFOLDihydrofolate reductase1.5.1.30.448
2fapRADPeptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.448
2fapRADSerine/threonine-protein kinase mTOR2.7.11.10.448
2vdyHCYCorticosteroid-binding globulin/0.448
2y1x845Histone-arginine methyltransferase CARM1/0.448
3t31DCQSulfide-quinone reductase/0.448
4lsaBLDProtein BRASSINOSTEROID INSENSITIVE 12.7.10.10.448
5jqhCAUBeta-2 adrenergic receptor/0.448
1mkdZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.447
1tfz8694-hydroxyphenylpyruvate dioxygenase1.13.11.270.447
1zgcA2EAcetylcholinesterase3.1.1.70.447
2ovyPFJcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.447
3frkTQPQdtB/0.447
3r43ID8Aldo-keto reductase family 1 member C3/0.447
4pabTHGDimethylglycine dehydrogenase, mitochondrial1.5.8.40.447
5ab7MLCNonspecific lipid-transfer protein, putative/0.447
1ej3CZHAequorin-2/0.446
1xf0ASDAldo-keto reductase family 1 member C3/0.446
1y2e5DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.446
1yryMSGPurine nucleoside phosphorylase2.4.2.10.446
3abxRCBGlucanase/0.446
3nubUD0UDP-2-acetamido-2-deoxy-3-oxo-D-glucuronate aminotransferase2.6.1.980.446
3uweVJJAldo-keto reductase family 1 member C3/0.446
4mvh2F5cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.446
4mzuTYDWxcM-like protein/0.446
4nbiD3YD-tyrosyl-tRNA(Tyr) deacylase/0.446
1k4mNADNicotinate-nucleotide adenylyltransferase2.7.7.180.445
1rpwDIDHTH-type transcriptional regulator QacR/0.445
1sg0STLRibosyldihydronicotinamide dehydrogenase [quinone]/0.445
1ye4NADNAD(P)H-dependent D-xylose reductase1.1.1.3070.445
2ckmAA7Acetylcholinesterase3.1.1.70.445
2psjCEIRenilla-luciferin 2-monooxygenase1.13.12.50.445
3ituIBMcGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.445
3pz3PZ3Geranylgeranyl transferase type-2 subunit beta2.5.1.600.445
3uzzTES3-oxo-5-beta-steroid 4-dehydrogenase/0.445
4bvhOCZNAD-dependent protein deacetylase sirtuin-3, mitochondrial3.5.10.445
4bvnP32Beta-1 adrenergic receptor/0.445
4dbuBT9Aldo-keto reductase family 1 member C3/0.445
4drjRAPSerine/threonine-protein kinase mTOR2.7.11.10.445
4drjRAPPeptidyl-prolyl cis-trans isomerase FKBP45.2.1.80.445
4hfr14MCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.445
5ds309LPoly [ADP-ribose] polymerase 12.4.2.300.445
5d6lCAUBeta-2 adrenergic receptor/0.445
3ny9JSZBeta-2 adrenergic receptor/0.445
1mczRMNBenzoylformate decarboxylase4.1.1.70.444
1yhjR6CPyridoxal kinase2.7.1.350.444
3gsiTHGDimethylglycine oxidase1.5.3.100.444
3h3t16HCollagen type IV alpha-3-binding protein/0.444
3u57DH8Raucaffricine-O-beta-D-glucosidase3.2.1.1250.444
4kfjFOLDihydrofolate reductase1.5.1.30.444
4tm3FADKtzI/0.444
1al7HSTPeroxisomal (S)-2-hydroxy-acid oxidase1.1.3.150.443
1dgfNDPCatalase1.11.1.60.443
1fdsESTEstradiol 17-beta-dehydrogenase 11.1.1.620.443
1tbbROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.443
1v7aFRCAdenosine deaminase3.5.4.40.443
2gpvOHTEstrogen-related receptor gamma/0.443
2wsa646Glycylpeptide N-tetradecanoyltransferase/0.443
3dylPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.443
3o56ZG1cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.443
3uzxAOM3-oxo-5-beta-steroid 4-dehydrogenase/0.443
3zecANPAdenosine monophosphate-protein transferase SoFic2.7.7.n10.443
4kn0MTXFolate receptor beta/0.443
4ky404JBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.443
4li81XQTankyrase-12.4.2.300.443
4msk2C8Tankyrase-12.4.2.300.443
4wo5324Serine/threonine-protein kinase B-raf2.7.11.10.443
5fd8A5APutative carboxypeptidase yocD/0.443
1oynROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.442
1qv1CZHObelin/0.442
1vp5NAPOxidoreductase, aldo/keto reductase family/0.442
2ga2A19Methionine aminopeptidase 2/0.442
2jj2ANPATP synthase subunit beta, mitochondrial3.6.3.140.442
2weyEV1cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.442
4dbw511Aldo-keto reductase family 1 member C3/0.442
4jt91NSNAD-dependent protein deacetylase sirtuin-3, mitochondrial3.5.10.442
1bk0ACVIsopenicillin N synthase1.21.3.10.441
1eveE20Acetylcholinesterase3.1.1.70.441
1m9m6NINitric oxide synthase, endothelial1.14.13.390.441
1ohkCOPDihydrofolate reductase1.5.1.30.441
1pd9CO4Dihydrofolate reductase1.5.1.30.441
1s2cFLFAldo-keto reductase family 1 member C3/0.441
1yw9A84Methionine aminopeptidase 2/0.441
2ipiAKYAclacinomycin-N/aclacinomycin-A oxidase/0.441
2zsdCOAPantothenate kinase2.7.1.330.441
3d2dRENReticuline oxidase1.21.3.30.441
3d3p20AcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.441
3zhoFMNNAD(P)H dehydrogenase (quinone)/0.441
4e2zJHZMethyltransferase/0.441
4nv7COAArylamine N-acetyltransferase/0.441
4to1DCPDeoxynucleoside triphosphate triphosphohydrolase SAMHD13.1.50.441
5d5aCAUBeta-2 adrenergic receptor/0.441
1dgbNDPCatalase1.11.1.60.440
1fmlRTLRetinol dehydratase/0.440
1tcoFK5Peptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.440
1tcoFK5Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform3.1.3.160.440
1vrqFONSubunit alpha of sarocosine oxidase/0.440
1wsvTHHAminomethyltransferase, mitochondrial/0.440
3k4s0MOcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.440
3l3mA92Poly [ADP-ribose] polymerase 12.4.2.300.440
3ziaADPATP synthase subunit beta, mitochondrial3.6.3.140.440
3zkuHCVIsopenicillin N synthase1.21.3.10.440
4bb2STRCorticosteroid-binding globulin/0.440
4hhz15SPoly [ADP-ribose] polymerase 12.4.2.300.440
5a4vQUEGlutathione S-transferase F22.5.1.180.440
4amiG90Beta-1 adrenergic receptor/0.440