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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3lv1NAPNAD(P)-dependent benzaldehyde dehydrogenase1.2.1.28

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3lv1NAPNAD(P)-dependent benzaldehyde dehydrogenase1.2.1.281.000
3lnsNAPNAD(P)-dependent benzaldehyde dehydrogenase1.2.1.280.580
3ju8NADN-succinylglutamate 5-semialdehyde dehydrogenase1.2.1.710.500
1uxnNAPNAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase/0.458
2jg7NADAntiquitin/0.449
4pxnNADAldehyde dehydrogenase family 7 member B4/0.441
2j6lNAIAlpha-aminoadipic semialdehyde dehydrogenase1.2.1.310.440