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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3lshFADPyranose 2-oxidase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3lshFADPyranose 2-oxidase/1.000
4mokFADPyranose 2-oxidase/0.610
3k4nFADPyranose 2-oxidase/0.585
3lsiFADPyranose 2-oxidase/0.573
3k4cFADPyranose 2-oxidase/0.570
3lsmSFDPyranose 2-oxidase/0.558
4qi4FADCellobiose dehydrogenase/0.503
4qi7FADCellobiose dehydrogenase/0.497
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.476
4nd2A3DLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase/0.474
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.472
3b70NAPEnoyl reductase LovC10.469
1nqoNADGlyceraldehyde-3-phosphate dehydrogenase/0.467
2d1yNADOxidoreductase, short-chain dehydrogenase/reductase family/0.463
3hjaNADGlyceraldehyde-3-phosphate dehydrogenase/0.460
4qi5FADCellobiose dehydrogenase/0.459
1n4wFADCholesterol oxidase1.1.3.60.457
3gyiFADCholesterol oxidase1.1.3.60.457
1yb5NAPQuinone oxidoreductase1.6.5.50.456
3b6dFAECholesterol oxidase1.1.3.60.456
3cmcNADGlyceraldehyde-3-phosphate dehydrogenase/0.456
3gyjFADCholesterol oxidase1.1.3.60.456
4usqFADPyridine nucleotide-disulfide oxidoreductase/0.456
1ju2FAD(R)-mandelonitrile lyase 24.1.2.100.455
1n4uFAECholesterol oxidase1.1.3.60.455
2zb3NDPProstaglandin reductase 21.3.1.480.455
4u2tFADCholesterol oxidase1.1.3.60.454
5a3bAPRSIR2 family protein/0.454
1b8sFADCholesterol oxidase1.1.3.60.453
2gewFADCholesterol oxidase1.1.3.60.451
2pr2DG1Enoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.451
3gw9VNILanosterol 14-alpha-demethylase/0.451
2f1kNAPPrephenate dehydrogenase/0.450
3t2zFADSulfide-quinone reductase/0.449
1zemNADXylitol dehydrogenase/0.448
3g49NAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.448
4xxgFADCholesterol oxidase1.1.3.60.448
2ylzFADPhenylacetone monooxygenase1.14.13.920.447
3gqvNAPEnoyl reductase LovC10.447
1gteFADDihydropyrimidine dehydrogenase [NADP(+)]1.3.1.20.446
4eudCOASuccinyl-CoA:acetate CoA-transferase/0.446
4fw8NAI3-oxoacyl-(Acyl-carrier-protein) reductase/0.446
5hsaFASAlcohol oxidase 11.1.3.130.446
4xwrFADCholesterol oxidase1.1.3.60.445
5bsgNAPPyrroline-5-carboxylate reductase/0.445
2ylrFADPhenylacetone monooxygenase1.14.13.920.444
2ywlFADThioredoxin reductase related protein/0.444
4yryFADGlutamate synthase, beta subunit/0.444
1nqaNADGlyceraldehyde-3-phosphate dehydrogenase/0.443
3lvfNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.443
3t2yFADSulfide-quinone reductase/0.443
3tqhNDPQuinone oxidoreductase/0.443
4d04FADPhenylacetone monooxygenase1.14.13.920.443
2cvjFADThioredoxin reductase related protein/0.442
4udrFAD5-(hydroxymethyl)furfural oxidase/0.442
3ol5SAWCamphor 5-monooxygenase1.14.15.10.441
4rekFADCholesterol oxidase1.1.3.60.441
2ch6ADPN-acetyl-D-glucosamine kinase2.7.1.590.440
3vqrFADPutative oxidoreductase/0.440
4hfmNAP2-alkenal reductase (NADP(+)-dependent)/0.440
4r21STRCytochrome P450 family 17 polypeptide 2/0.440