scPDB - Distribution of Binding site Similarity values of 3ldg entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
3ldg	SAH	Uncharacterized protein

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
3ldg	SAH	Uncharacterized protein	/	1.000
1mht	SAH	Modification methylase HhaI	2.1.1.37	0.508
5mht	SAH	Modification methylase HhaI	2.1.1.37	0.498
7mht	SAH	Modification methylase HhaI	2.1.1.37	0.492
1fjx	SAH	Modification methylase HhaI	2.1.1.37	0.485
2i9k	SAH	Modification methylase HhaI	2.1.1.37	0.483
3tm5	SFG	Uncharacterized protein	/	0.482
2hmy	SAM	Modification methylase HhaI	2.1.1.37	0.480
8mht	SAH	Modification methylase HhaI	2.1.1.37	0.478
9mht	SAH	Modification methylase HhaI	2.1.1.37	0.475
3tlj	SAH	Uncharacterized protein	/	0.471
1skm	SAH	Modification methylase HhaI	2.1.1.37	0.467
3tm4	SAM	Uncharacterized protein	/	0.466
10mh	SAH	Modification methylase HhaI	2.1.1.37	0.465
4mht	SAH	Modification methylase HhaI	2.1.1.37	0.461
2zcj	SAH	Modification methylase HhaI	2.1.1.37	0.458
5e8j	SAH	mRNA cap guanine-N7 methyltransferase	2.1.1.56	0.457
2uyh	SAH	Modification methylase HhaI	2.1.1.37	0.456
3mht	SAH	Modification methylase HhaI	2.1.1.37	0.451
3pt6	SAH	DNA (cytosine-5)-methyltransferase 1	2.1.1.37	0.451
2c7q	SAH	Modification methylase HhaI	2.1.1.37	0.450
3zkp	ERB	Erythromycin C-12 hydroxylase	1.14.13.154	0.449
5f8e	SAH	Possible transcriptional regulatory protein	/	0.448
3g7j	GTX	Glutathione transferase GST1-4	/	0.446
4jx1	CAM	Camphor 5-monooxygenase	1.14.15.1	0.446
2ktd	PUC	Prostaglandin-H2 D-isomerase	5.3.99.2	0.443