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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3lakKR1Gag-Pol polyprotein2.7.7.49

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3lakKR1Gag-Pol polyprotein2.7.7.491.000
3t1a5MAGag-Pol polyprotein2.7.7.490.612
3drpR8EGag-Pol polyprotein2.7.7.490.610
3c6uM22Gag-Pol polyprotein2.7.7.490.597
3lalKRVGag-Pol polyprotein2.7.7.490.597
3dyaPZLGag-Pol polyprotein2.7.7.490.596
3t195MAGag-Pol polyprotein2.7.7.490.588
3c6tM14Gag-Pol polyprotein2.7.7.490.587
3tamM06Gag-Pol polyprotein2.7.7.490.582
2be2R22Gag-Pol polyprotein2.7.7.490.573
4h4m494Gag-Pol polyprotein2.7.7.490.569
3dokGWJPol protein/0.562
4h4o506Gag-Pol polyprotein2.7.7.490.559
4rw4494Gag-Pol polyprotein2.7.7.490.556
3dmjGWEPol protein/0.550
3drrR8EGag-Pol polyprotein2.7.7.490.549
4rw6494Gag-Pol polyprotein2.7.7.490.536
3ffi3OBGag-Pol polyprotein2.7.7.490.532
4mfb29TGag-Pol polyprotein2.7.7.490.532
3is9AC7Gag-Pol polyprotein2.7.7.490.529
3lamKRPGag-Pol polyprotein2.7.7.490.529
2wonZZEGag-Pol polyprotein2.7.7.490.527
2ynhEURGag-Pol polyprotein2.7.7.490.527
2jleI15Reverse transcriptase/RNaseH/0.525
1c1bGCAGag-Pol polyprotein2.7.7.490.522
2ynfWHUGag-Pol polyprotein2.7.7.490.520
3lanKBTGag-Pol polyprotein2.7.7.490.518
3dolGWIPol protein/0.511
2b5j3ACGag-Pol polyprotein2.7.7.490.505
4lsl1YQGag-Pol polyprotein2.7.7.490.501
3nbpJGZGag-Pol polyprotein2.7.7.490.498
3dlgGWEGag-Pol polyprotein2.7.7.490.496
1klmSPPGag-Pol polyprotein2.7.7.490.495
3di6PDZGag-Pol polyprotein2.7.7.490.493
3dleGFAGag-Pol polyprotein2.7.7.490.490
3e01PZ2Gag-Pol polyprotein2.7.7.490.485
1rt1MKCGag-Pol polyprotein2.7.7.490.484
1jlaTNKGag-Pol polyprotein2.7.7.490.483
1ep4S11Gag-Pol polyprotein2.7.7.490.477
1rt2TNKGag-Pol polyprotein2.7.7.490.475
3i0rRT3Gag-Pol polyprotein2.7.7.490.473
1c1c612Gag-Pol polyprotein2.7.7.490.468
4i7fNVEGag-Pol polyprotein2.7.7.490.458
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.458
4id5T27Gag-Pol polyprotein2.7.7.490.457
3bgrT27Gag-Pol polyprotein2.7.7.490.455
2zd1T27Gag-Pol polyprotein2.7.7.490.452
4wa9AXITyrosine-protein kinase ABL12.7.10.20.452
3pwhZMAAdenosine receptor A2a/0.452
1s1vTNKGag-Pol polyprotein2.7.7.490.451
3p3zP3ZPutative cytochrome P450/0.441
5cyqT27Gag-Pol polyprotein2.7.7.490.441