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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3l05SN0N-acetylornithine carbamoyltransferase2.1.3.9

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3l05SN0N-acetylornithine carbamoyltransferase2.1.3.91.000
3l06SN0N-acetylornithine carbamoyltransferase2.1.3.90.768
3kzoAN0N-acetylornithine carbamoyltransferase2.1.3.90.620
3m4nPA9N-acetylornithine carbamoyltransferase2.1.3.90.564
3l04SN0N-acetylornithine carbamoyltransferase2.1.3.90.552
2nomDUTPoly(A) polymerase, putative/0.465
3zkuHCVIsopenicillin N synthase1.21.3.10.465
4gyzD5MTyrosyl-DNA phosphodiesterase 23.1.40.459
2yq92AM2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.449
2gesCOKPantothenate kinase2.7.1.330.446
4bgePYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.446
4uugPXGBranched-chain amino acid aminotransferase, putative/0.441
1lkeDOGBilin-binding protein/0.440