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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3kruFMNNADH:flavin oxidoreductase/NADH oxidase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3kruFMNNADH:flavin oxidoreductase/NADH oxidase/1.000
1z44FMNNADPH dehydrogenase/0.636
3hf3FMNChromate reductase/0.612
1z41FMNNADPH dehydrogenase/0.605
1z48FMNNADPH dehydrogenase/0.573
3l5lFMNXenobiotic reductase/0.495
3gr8FMNNADPH dehydrogenase/0.487
2hs8FMN12-oxophytodienoate reductase 31.3.1.420.479
3p84FMNPentaerythritol tetranitrate reductase/0.477
3p8jFMNPentaerythritol tetranitrate reductase/0.471
1h50FMNPentaerythritol tetranitrate reductase/0.467
3f03FMNPentaerythritol tetranitrate reductase/0.463
1vyrFMNPentaerythritol tetranitrate reductase/0.458
3hgsFMN12-oxophytodienoate reductase 31.3.1.420.456
2gouFMNNADH:flavin oxidoreductase Sye1/0.454
1h51FMNPentaerythritol tetranitrate reductase/0.451
4qnwFMNChanoclavine-I aldehyde reductase easA/0.451
1icsFMN12-oxophytodienoate reductase 11.3.1.420.448
3n14FMNXenobiotic reductase/0.447
3p62FMNPentaerythritol tetranitrate reductase/0.447
2abbFMNPentaerythritol tetranitrate reductase/0.444