sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3kjr | NAP | Bifunctional dihydrofolate reductase-thymidylate synthase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 3kjr | NAP | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 1.000 | |
| 2w3b | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.565 | |
| 3qls | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.556 | |
| 3tqa | NDP | Dihydrofolate reductase | / | 0.538 | |
| 3kjs | NAP | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.530 | |
| 3clb | NAP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.528 | |
| 3hbb | NAP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.527 | |
| 3inv | NDP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.526 | |
| 1dr3 | TAP | Dihydrofolate reductase | 1.5.1.3 | 0.523 | |
| 3dga | NDP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.521 | |
| 1dg8 | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.520 | |
| 1dr2 | TAP | Dihydrofolate reductase | 1.5.1.3 | 0.516 | |
| 8dfr | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.516 | |
| 2h2q | NAP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.507 | |
| 1dr5 | NAP | Dihydrofolate reductase | 1.5.1.3 | 0.506 | |
| 1drh | NAP | Dihydrofolate reductase | 1.5.1.3 | 0.506 | |
| 3nxx | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.504 | |
| 1ia1 | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.493 | |
| 1rx1 | NAP | Dihydrofolate reductase | 1.5.1.3 | 0.493 | |
| 2cig | 1DG | Dihydrofolate reductase | 1.5.1.3 | 0.483 | |
| 1j3k | NDP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.482 | |
| 1j3j | NDP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.477 | |
| 3gw9 | VNI | Lanosterol 14-alpha-demethylase | / | 0.477 | |
| 3qlr | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.475 | |
| 4g3j | VNT | Lanosterol 14-alpha-demethylase | / | 0.475 | |
| 4kl9 | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.470 | |
| 3gqv | NAP | Enoyl reductase LovC | 1 | 0.467 | |
| 1ai9 | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.465 | |
| 4m6j | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.464 | |
| 1m78 | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.463 | |
| 3lqf | NAD | Galactitol dehydrogenase | / | 0.461 | |
| 4q71 | FAD | Bifunctional protein PutA | / | 0.461 | |
| 5ecc | NAP | Dehydrofolate reductase type I | / | 0.460 | |
| 1y0s | 331 | Peroxisome proliferator-activated receptor delta | / | 0.458 | |
| 2cf6 | NAP | Cinnamyl alcohol dehydrogenase 5 | 1.1.1.195 | 0.458 | |
| 3dg8 | NDP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.458 | |
| 5jsc | FAD | Putative acyl-CoA dehydrogenase | / | 0.458 | |
| 1xdd | AAY | Integrin alpha-L | / | 0.457 | |
| 1xe5 | 5FE | Plasmepsin-2 | 3.4.23.39 | 0.457 | |
| 4g7g | VFV | Lanosterol 14-alpha-demethylase | / | 0.457 | |
| 4ozt | P1A | Ecdysone receptor, putative | / | 0.457 | |
| 2y05 | NAP | Prostaglandin reductase 1 | / | 0.456 | |
| 1me6 | IVS | Plasmepsin-2 | 3.4.23.39 | 0.455 | |
| 3d84 | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.454 | |
| 4q73 | FAD | Bifunctional protein PutA | / | 0.454 | |
| 5ahs | FAD | Acyl-CoA dehydrogenase | / | 0.450 | |
| 2gmh | FAD | Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial | 1.5.5.1 | 0.449 | |
| 3b70 | NAP | Enoyl reductase LovC | 1 | 0.449 | |
| 2wyv | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | / | 0.448 | |
| 4nxu | ADP | Mitochondrial dynamics protein MID51 | / | 0.448 | |
| 1ma0 | NAD | Alcohol dehydrogenase class-3 | 1.1.1.1 | 0.447 | |
| 1udy | FAD | Medium-chain specific acyl-CoA dehydrogenase, mitochondrial | 1.3.8.7 | 0.447 | |
| 3b6z | CO7 | Enoyl reductase LovC | 1 | 0.447 | |
| 1f8f | NAD | Benzyl alcohol dehydrogenase | / | 0.444 | |
| 2eba | FAD | Putative glutaryl-CoA dehydrogenase | / | 0.444 | |
| 2zjm | F1M | Beta-secretase 1 | 3.4.23.46 | 0.443 | |
| 3bc3 | OPT | Cathepsin L1 | 3.4.22.15 | 0.443 | |
| 3jv7 | NAD | Secondary alcohol dehydrogenase | / | 0.442 | |
| 4bc7 | FAD | Alkyldihydroxyacetonephosphate synthase, peroxisomal | 2.5.1.26 | 0.442 | |
| 4dfg | 0JV | Gag-Pol polyprotein | 3.4.23.16 | 0.442 | |
| 2ztl | NAD | D(-)-3-hydroxybutyrate dehydrogenase | / | 0.441 | |
| 4bfx | ZVX | Pantothenate kinase | 2.7.1.33 | 0.441 | |
| 4ejm | NAP | Putative zinc-binding dehydrogenase | / | 0.441 | |
| 4nd4 | NAD | Lactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase | / | 0.441 | |
| 1d4a | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.440 | |
| 1e3e | NAI | Alcohol dehydrogenase 4 | 1.1.1.1 | 0.440 | |
| 1iol | EST | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.440 | |
| 2rbe | NDP | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.440 | |
| 3ggo | NAI | Prephenate dehydrogenase | / | 0.440 |