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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3kflME8Putative methionyl-tRNA synthetase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3kflME8Putative methionyl-tRNA synthetase/1.000
2ct8MSPMethionine--tRNA ligase6.1.1.100.521
1gaxVAAValine--tRNA ligase6.1.1.90.481
1pfyMSPMethionine--tRNA ligase6.1.1.100.478
1pg0MODMethionine--tRNA ligase6.1.1.100.466
2qtrNXXProbable nicotinate-nucleotide adenylyltransferase/0.449