Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3kap | FMN | Flavodoxin |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 3kap | FMN | Flavodoxin | / | 1.000 | |
| 3kaq | FMN | Flavodoxin | / | 0.590 | |
| 1j9g | FMN | Flavodoxin | / | 0.585 | |
| 1fx1 | FMN | Flavodoxin | / | 0.577 | |
| 2fx2 | FMN | Flavodoxin | / | 0.573 | |
| 1wsb | FMN | Flavodoxin | / | 0.571 | |
| 1azl | FMN | Flavodoxin | / | 0.558 | |
| 1xyv | FMN | Flavodoxin | / | 0.553 | |
| 3f6r | FMN | Flavodoxin | / | 0.547 | |
| 1bu5 | RBF | Flavodoxin | / | 0.538 | |
| 1xyy | FMN | Flavodoxin | / | 0.536 | |
| 3f90 | FMN | Flavodoxin | / | 0.522 | |
| 1j8q | FMN | Flavodoxin | / | 0.521 | |
| 5tgz | FMN | Cannabinoid receptor 1 | / | 0.519 | |
| 1aku | FMN | Flavodoxin | / | 0.516 | |
| 3fhx | PLP | Pyridoxal kinase | 2.7.1.35 | 0.515 | |
| 4fx2 | FMN | Flavodoxin | / | 0.514 | |
| 3f6s | FMN | Flavodoxin | / | 0.509 | |
| 3ojx | FMN | NADPH--cytochrome P450 reductase | / | 0.509 | |
| 1c7f | FMN | Flavodoxin | / | 0.506 | |
| 2q7o | IMH | Purine nucleoside phosphorylase | 2.4.2.1 | 0.500 | |
| 3dyn | PCG | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.499 | |
| 4n82 | FMN | Ribonucleotide reductase (NrdI family protein), putative | / | 0.496 | |
| 5fd8 | A5A | Putative carboxypeptidase yocD | / | 0.496 | |
| 2mok | FMN | Flavodoxin 1 | / | 0.495 | |
| 1sg0 | STL | Ribosyldihydronicotinamide dehydrogenase [quinone] | / | 0.494 | |
| 4g2j | 0WF | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.494 | |
| 1akr | FMN | Flavodoxin | / | 0.492 | |
| 3dys | 5GP | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.492 | |
| 5xra | FMN | Cannabinoid receptor 1 | / | 0.491 | |
| 2yy2 | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.489 | |
| 3ada | NAD | Subunit alpha of sarocosine oxidase | / | 0.489 | |
| 4h6p | FMN | Chromate reductase | / | 0.489 | |
| 4oxx | FMN | Cindoxin | / | 0.488 | |
| 1akw | FMN | Flavodoxin | / | 0.486 | |
| 1dlj | UGA | UDP-glucose 6-dehydrogenase | / | 0.485 | |
| 2v5u | FMN | Flavodoxin | / | 0.484 | |
| 1kbo | 340 | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.483 | |
| 1xdd | AAY | Integrin alpha-L | / | 0.482 | |
| 3dyl | PCG | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.482 | |
| 4ey6 | GNT | Acetylcholinesterase | 3.1.1.7 | 0.481 | |
| 4kxj | P34 | Nucleoprotein | / | 0.481 | |
| 2dhf | DZF | Dihydrofolate reductase | 1.5.1.3 | 0.480 | |
| 3eks | CY9 | Actin-5C | / | 0.480 | |
| 1xh7 | R96 | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.479 | |
| 1czn | FMN | Flavodoxin | / | 0.478 | |
| 2fcr | FMN | Flavodoxin | / | 0.477 | |
| 2pzj | NAD | Putative nucleotide sugar epimerase/ dehydratase | / | 0.477 | |
| 2ct8 | MSP | Methionine--tRNA ligase | 6.1.1.10 | 0.475 | |
| 2po3 | T4K | 4-dehydrase | / | 0.475 | |
| 3e6e | DCS | Alanine racemase | / | 0.475 | |
| 3otw | COA | Phosphopantetheine adenylyltransferase | / | 0.475 | |
| 2whq | HI6 | Acetylcholinesterase | 3.1.1.7 | 0.474 | |
| 1pqc | 444 | Oxysterols receptor LXR-beta | / | 0.473 | |
| 2a2c | ADP | N-acetylgalactosamine kinase | 2.7.1.157 | 0.473 | |
| 3c27 | DKK | Prothrombin | 3.4.21.5 | 0.473 | |
| 3dyq | PCG | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.473 | |
| 3clr | FAD | Electron transfer flavoprotein subunit alpha | / | 0.471 | |
| 3nu0 | 3TU | Dihydrofolate reductase | 1.5.1.3 | 0.471 | |
| 4a95 | 9MT | Glycylpeptide N-tetradecanoyltransferase | / | 0.471 | |
| 4b12 | C23 | Glycylpeptide N-tetradecanoyltransferase | / | 0.471 | |
| 1mvs | DTM | Dihydrofolate reductase | 1.5.1.3 | 0.470 | |
| 2gvd | FKP | Adenylate cyclase type 2 | / | 0.470 | |
| 2gvd | FKP | Adenylate cyclase type 5 | / | 0.470 | |
| 2yne | YNE | Glycylpeptide N-tetradecanoyltransferase | / | 0.470 | |
| 3br3 | ET | HTH-type transcriptional regulator QacR | / | 0.470 | |
| 3rtn | RTN | Beta-secretase 1 | 3.4.23.46 | 0.470 | |
| 3zj7 | C1K | Strictosidine-O-beta-D-glucosidase | 3.2.1.105 | 0.470 | |
| 4iar | ERM | 5-hydroxytryptamine receptor 1B | / | 0.470 | |
| 1blz | ACV | Isopenicillin N synthase | 1.21.3.1 | 0.469 | |
| 1s3u | TQD | Dihydrofolate reductase | 1.5.1.3 | 0.469 | |
| 2bf4 | FMN | NADPH--cytochrome P450 reductase | / | 0.469 | |
| 2ea2 | F77 | Methionine aminopeptidase 2 | / | 0.469 | |
| 2zi2 | 24U | Prothrombin | 3.4.21.5 | 0.469 | |
| 3rdq | DTB | Streptavidin | / | 0.469 | |
| 3wqt | ANP | Cell division protein FtsA | / | 0.469 | |
| 1sd2 | MTH | S-methyl-5'-thioadenosine phosphorylase | / | 0.468 | |
| 2vbd | V10 | Isopenicillin N synthase | 1.21.3.1 | 0.468 | |
| 3n39 | FMN | Protein NrdI | / | 0.468 | |
| 3qvr | FAD | Glucose oxidase | 1.1.3.4 | 0.468 | |
| 4oex | 5EO | cGMP-specific 3',5'-cyclic phosphodiesterase | / | 0.468 | |
| 4y7c | FMN | NADPH--cytochrome P450 reductase | / | 0.468 | |
| 2jb4 | A14 | Isopenicillin N synthase | 1.21.3.1 | 0.467 | |
| 3fhx | PXL | Pyridoxal kinase | 2.7.1.35 | 0.467 | |
| 3in6 | FMN | Uncharacterized protein | / | 0.467 | |
| 4keb | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.467 | |
| 4qai | FMN | NADPH dehydrogenase | / | 0.467 | |
| 1hb3 | SCV | Isopenicillin N synthase | 1.21.3.1 | 0.466 | |
| 1mvt | DTM | Dihydrofolate reductase | 1.5.1.3 | 0.466 | |
| 1nzy | BCA | 4-chlorobenzoyl coenzyme A dehalogenase | 3.8.1.7 | 0.466 | |
| 3sqz | COA | Putative hydroxymethylglutaryl-CoA synthase | / | 0.466 | |
| 3zv7 | NHG | Acetylcholinesterase | 3.1.1.7 | 0.466 | |
| 1e66 | HUX | Acetylcholinesterase | 3.1.1.7 | 0.465 | |
| 1obn | ASV | Isopenicillin N synthase | 1.21.3.1 | 0.465 | |
| 2a2d | ANP | N-acetylgalactosamine kinase | 2.7.1.157 | 0.465 | |
| 2bn4 | FMN | NADPH--cytochrome P450 reductase | / | 0.465 | |
| 2g1n | 1IG | Renin | 3.4.23.15 | 0.465 | |
| 2ojt | UBA | Glutamate receptor ionotropic, kainate 1 | / | 0.465 | |
| 3wqu | ATP | Cell division protein FtsA | / | 0.465 | |
| 4kfq | KFQ | Glutamate receptor ionotropic, NMDA 1 | / | 0.465 | |
| 1jwt | BLI | Prothrombin | 3.4.21.5 | 0.464 | |
| 2zc9 | 22U | Prothrombin | 3.4.21.5 | 0.464 | |
| 3gnc | QQQ | Glutaryl-CoA dehydrogenase | / | 0.464 | |
| 3koy | Z97 | D-ornithine 4,5-aminomutase subunit beta | / | 0.464 | |
| 4bca | FAD | Alkyldihydroxyacetonephosphate synthase, peroxisomal | 2.5.1.26 | 0.464 | |
| 4cdm | FO1 | Deoxyribodipyrimidine photolyase | / | 0.464 | |
| 1pl6 | 572 | Sorbitol dehydrogenase | 1.1.1.14 | 0.463 | |
| 1udt | VIA | cGMP-specific 3',5'-cyclic phosphodiesterase | / | 0.463 | |
| 1z71 | L17 | Prothrombin | 3.4.21.5 | 0.463 | |
| 2a0y | DIH | Purine nucleoside phosphorylase | 2.4.2.1 | 0.463 | |
| 2bu9 | HFV | Isopenicillin N synthase | 1.21.3.1 | 0.463 | |
| 4bb3 | KKA | Isopenicillin N synthase | 1.21.3.1 | 0.462 | |
| 1ahn | FMN | Flavodoxin 1 | / | 0.461 | |
| 1hfq | MOT | Dihydrofolate reductase | 1.5.1.3 | 0.461 | |
| 1ypg | UIR | Prothrombin | 3.4.21.5 | 0.461 | |
| 2jl1 | NAP | Triphenylmethane reductase | / | 0.461 | |
| 2vbp | VB1 | Isopenicillin N synthase | 1.21.3.1 | 0.461 | |
| 3esz | FMN | Flavodoxin | / | 0.461 | |
| 4fse | 0VA | Beta-secretase 1 | 3.4.23.46 | 0.461 | |
| 1h69 | ARH | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.460 | |
| 1t4u | 81A | Prothrombin | 3.4.21.5 | 0.460 | |
| 3jqr | FAD | Ferredoxin--NADP reductase, apicoplast | / | 0.460 | |
| 3ojw | FAD | NADPH--cytochrome P450 reductase | / | 0.460 | |
| 4b14 | 4XB | Glycylpeptide N-tetradecanoyltransferase | / | 0.460 | |
| 4ead | 0NP | Thymidine phosphorylase | 2.4.2.4 | 0.460 | |
| 1rsz | DIH | Purine nucleoside phosphorylase | 2.4.2.1 | 0.459 | |
| 2hxz | H7J | Cathepsin S | 3.4.22.27 | 0.459 | |
| 2ivn | ANP | tRNA N6-adenosine threonylcarbamoyltransferase | / | 0.459 | |
| 2y6f | M9F | Isopenicillin N synthase | 1.21.3.1 | 0.459 | |
| 3qfr | FMN | NADPH--cytochrome P450 reductase | / | 0.459 | |
| 4a31 | 2CB | Glycylpeptide N-tetradecanoyltransferase | / | 0.459 | |
| 4epl | JAI | Jasmonic acid-amido synthetase JAR1 | 6.3.2 | 0.459 | |
| 4r1f | ADP | DNA topoisomerase 2-alpha | 5.99.1.3 | 0.459 | |
| 5hwr | COA | Hydroxymethylglutaryl-CoA synthase | / | 0.459 | |
| 1gky | 5GP | Guanylate kinase | 2.7.4.8 | 0.458 | |
| 1ix1 | BB2 | Peptide deformylase | / | 0.458 | |
| 2ivi | ACW | Isopenicillin N synthase | 1.21.3.1 | 0.458 | |
| 3arv | SAU | Chitinase A | / | 0.458 | |
| 3oaf | OAG | Dihydrofolate reductase | 1.5.1.3 | 0.458 | |
| 4b1j | A1R | Poly(ADP-ribose) glycohydrolase | 3.2.1.143 | 0.458 | |
| 4du6 | GTP | GTP cyclohydrolase 1 | / | 0.458 | |
| 4h6u | ACO | Alpha-tubulin N-acetyltransferase 1 | / | 0.458 | |
| 1pq9 | 44B | Oxysterols receptor LXR-beta | / | 0.457 | |
| 3esy | FMN | Flavodoxin | / | 0.457 | |
| 3vmm | P0D | Alanine--anticapsin ligase | / | 0.457 | |
| 4bby | FAD | Alkyldihydroxyacetonephosphate synthase, peroxisomal | 2.5.1.26 | 0.457 | |
| 4lrr | CF9 | Thymidylate synthase | / | 0.457 | |
| 1gg5 | E09 | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.456 | |
| 1lwi | NAP | 3-alpha-hydroxysteroid dehydrogenase | 1.1.1.50 | 0.456 | |
| 2bpo | FAD | NADPH--cytochrome P450 reductase | / | 0.456 | |
| 2cek | N8T | Acetylcholinesterase | 3.1.1.7 | 0.456 | |
| 3e8x | NAP | BH1520 protein | / | 0.456 | |
| 3hr4 | FMN | Nitric oxide synthase, inducible | 1.14.13.39 | 0.456 | |
| 3o73 | O73 | Ribosyldihydronicotinamide dehydrogenase [quinone] | / | 0.456 | |
| 4dpy | 2P0 | Mevalonate diphosphate decarboxylase | / | 0.456 | |
| 4ocv | ANP | Aminoglycoside phosphotransferase | / | 0.456 | |
| 5hbr | COA | Acyl-CoA synthetase (NDP forming) | / | 0.456 | |
| 1g63 | FMN | Epidermin decarboxylase | 4.1.1 | 0.455 | |
| 1hb1 | OCV | Isopenicillin N synthase | 1.21.3.1 | 0.455 | |
| 1m9h | NAD | 2,5-diketo-D-gluconic acid reductase A | 1.1.1.346 | 0.455 | |
| 1rkw | PNT | HTH-type transcriptional regulator QacR | / | 0.455 | |
| 1thz | 326 | Bifunctional purine biosynthesis protein PURH | 2.1.2.3 | 0.455 | |
| 1x8l | OXR | Retinol dehydratase | / | 0.455 | |
| 2a1h | GBN | Branched-chain-amino-acid aminotransferase, mitochondrial | 2.6.1.42 | 0.455 | |
| 2jh6 | 894 | Prothrombin | 3.4.21.5 | 0.455 | |
| 3clu | FAD | Electron transfer flavoprotein subunit alpha | / | 0.455 | |
| 3f03 | FMN | Pentaerythritol tetranitrate reductase | / | 0.455 | |
| 3qe2 | FMN | NADPH--cytochrome P450 reductase | / | 0.455 | |
| 4m0f | 1YK | Acetylcholinesterase | 3.1.1.7 | 0.455 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.455 | |
| 4ts7 | ADP | Purine phosphoribosyltransferase (GpT-1) | / | 0.455 | |
| 1kyv | RBF | 6,7-dimethyl-8-ribityllumazine synthase | 2.5.1.78 | 0.454 | |
| 1o97 | FAD | Electron transfer flavoprotein subunit alpha | / | 0.454 | |
| 1x1c | SAH | C-20 methyltransferase | / | 0.454 | |
| 2aj4 | ANP | Galactokinase | 2.7.1.6 | 0.454 | |
| 2v18 | FMN | Dodecin | / | 0.454 | |
| 2x9d | ITC | Tetracycline repressor protein class D | / | 0.454 | |
| 2zdv | 37U | Prothrombin | 3.4.21.5 | 0.454 | |
| 3q9b | B3N | Acetylpolyamine amidohydrolase | / | 0.454 | |
| 3qt6 | 2P0 | Mevalonate diphosphate decarboxylase | / | 0.454 | |
| 3uxv | GUN | NADPH-dependent 7-cyano-7-deazaguanine reductase | / | 0.454 | |
| 5dp2 | NAP | CurF | / | 0.454 | |
| 4s0v | SUV | Orexin receptor type 2 | / | 0.454 | |
| 1u71 | MXA | Dihydrofolate reductase | 1.5.1.3 | 0.453 | |
| 2ed4 | FAD | 4-hydroxyphenylacetate 3-monooxygenase reductase component | 1.5.1.36 | 0.453 | |
| 2f99 | AKV | Aklanonic acid methyl ester cyclase AcmA | 5.5.1.23 | 0.453 | |
| 2gfx | PMN | 3-oxoacyl-[acyl-carrier-protein] synthase 2 | 2.3.1.179 | 0.453 | |
| 2q1t | NAD | Putative nucleotide sugar epimerase/ dehydratase | / | 0.453 | |
| 3jsw | JAR | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.453 | |
| 3nyt | ULP | UDP-2-acetamido-2-deoxy-3-oxo-D-glucuronate aminotransferase | 2.6.1.98 | 0.453 | |
| 3rsv | 3RS | Beta-secretase 1 | 3.4.23.46 | 0.453 | |
| 1pd9 | CO4 | Dihydrofolate reductase | 1.5.1.3 | 0.452 | |
| 1vbi | NAD | Malate/L-lactate dehydrogenase family protein | / | 0.452 | |
| 2pnc | CLU | Primary amine oxidase, liver isozyme | / | 0.452 | |
| 2zts | ADP | Uncharacterized protein | / | 0.452 | |
| 3cgt | BCD | Cyclomaltodextrin glucanotransferase | 2.4.1.19 | 0.452 | |
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.452 | |
| 3w5u | FAD | Ferredoxin | / | 0.452 | |
| 4af6 | FAD | Ferredoxin--NADP reductase, leaf isozyme, chloroplastic | 1.18.1.2 | 0.452 | |
| 4b11 | 7I1 | Glycylpeptide N-tetradecanoyltransferase | / | 0.452 | |
| 4g2l | 0WL | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.452 | |
| 4jq4 | IMN | Aldo-keto reductase family 1 member C2 | / | 0.452 | |
| 4ubt | COA | Steroid 3-ketoacyl-CoA thiolase | / | 0.452 | |
| 1qjf | ACS | Isopenicillin N synthase | 1.21.3.1 | 0.451 | |
| 1rt9 | IMH | Purine nucleoside phosphorylase | 2.4.2.1 | 0.451 | |
| 2a9z | 26A | Adenosine kinase | 2.7.1.20 | 0.451 | |
| 2v2z | CDM | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase | / | 0.451 | |
| 2zhf | 49U | Prothrombin | 3.4.21.5 | 0.451 | |
| 3c1k | T15 | Prothrombin | 3.4.21.5 | 0.451 | |
| 3irm | 1CY | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.451 | |
| 3mau | EXT | Putative sphingosine-1-phosphate lyase | / | 0.451 | |
| 4acu | QN7 | Beta-secretase 1 | 3.4.23.46 | 0.451 | |
| 4bfx | ZVX | Pantothenate kinase | 2.7.1.33 | 0.451 | |
| 4dyp | 0MS | Nucleoprotein | / | 0.451 | |
| 4m6l | 21V | Dihydrofolate reductase | 1.5.1.3 | 0.451 | |
| 4mrm | 2BY | Gamma-aminobutyric acid type B receptor subunit 1 | / | 0.451 | |
| 5xr8 | FMN | Cannabinoid receptor 1 | / | 0.451 | |
| 1d6w | 00R | Prothrombin | 3.4.21.5 | 0.450 | |
| 1kyx | CRM | 6,7-dimethyl-8-ribityllumazine synthase | 2.5.1.78 | 0.450 | |
| 1oxo | IK2 | Aspartate aminotransferase, mitochondrial | 2.6.1.1 | 0.450 | |
| 2a0x | DIH | Purine nucleoside phosphorylase | 2.4.2.1 | 0.450 | |
| 2nmt | MIM | Glycylpeptide N-tetradecanoyltransferase | 2.3.1.97 | 0.450 | |
| 2y60 | M8F | Isopenicillin N synthase | 1.21.3.1 | 0.450 | |
| 3dys | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.450 | |
| 3g0y | P9A | 3-oxoacyl-[acyl-carrier-protein] synthase 2 | 2.3.1.179 | 0.450 | |
| 3go4 | SAH | Uncharacterized protein | / | 0.450 | |
| 4jq3 | NAP | Aldo-keto reductase family 1 member C2 | / | 0.450 | |
| 4uug | PXG | Branched-chain amino acid aminotransferase, putative | / | 0.450 | |
| 1v45 | 3DG | Purine nucleoside phosphorylase | 2.4.2.1 | 0.449 | |
| 2ejz | SAH | Diphthine synthase | / | 0.449 | |
| 2fgk | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.449 | |
| 2pk3 | A2R | GDP-6-deoxy-D-mannose reductase | / | 0.449 | |
| 2vi5 | Y19 | 6,7-dimethyl-8-ribityllumazine synthase | 2.5.1.78 | 0.449 | |
| 3b1d | PLS | BetaC-S lyase | / | 0.449 | |
| 3nn6 | HNK | 6-hydroxy-L-nicotine oxidase | / | 0.449 | |
| 4b4v | L34 | Bifunctional protein FolD | / | 0.449 | |
| 4bam | MM9 | Prothrombin | 3.4.21.5 | 0.449 | |
| 4bbh | YBN | Glycylpeptide N-tetradecanoyltransferase | / | 0.449 | |
| 4df2 | FMN | NADPH dehydrogenase | / | 0.449 | |
| 4e90 | 7RG | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.449 | |
| 4xg1 | LLP | Diaminopimelate decarboxylase | / | 0.449 | |
| 4yek | THM | Thymidine phosphorylase | / | 0.449 | |
| 5a8a | ADP | Riboflavin biosynthesis protein RibF | 2.7.1.26 | 0.449 | |
| 7std | CRP | Scytalone dehydratase | 4.2.1.94 | 0.449 | |
| 1dli | UDX | UDP-glucose 6-dehydrogenase | / | 0.448 | |
| 1gzu | NMN | Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 | 2.7.7.1 | 0.448 | |
| 1zgc | A2E | Acetylcholinesterase | 3.1.1.7 | 0.448 | |
| 2cmf | F11 | Acetylcholinesterase | 3.1.1.7 | 0.448 | |
| 2g25 | TDK | Pyruvate dehydrogenase E1 component | 1.2.4.1 | 0.448 | |
| 2zda | 32U | Prothrombin | 3.4.21.5 | 0.448 | |
| 3apw | DP0 | Alpha-1-acid glycoprotein 2 | / | 0.448 | |
| 3cls | FAD | Electron transfer flavoprotein subunit alpha | / | 0.448 | |
| 3fr5 | I4A | Fatty acid-binding protein, adipocyte | / | 0.448 | |
| 3rup | ADP | Biotin carboxylase | 6.3.4.14 | 0.448 | |
| 3w5h | FAD | NADH-cytochrome b5 reductase 3 | 1.6.2.2 | 0.448 | |
| 5jsf | NAD | 17-beta-hydroxysteroid dehydrogenase 14 | 1.1.1 | 0.448 | |
| 1amo | FMN | NADPH--cytochrome P450 reductase | / | 0.447 | |
| 2ewm | NAD | (S)-1-Phenylethanol dehydrogenase | 1.1.1.311 | 0.447 | |
| 2p8u | COA | Hydroxymethylglutaryl-CoA synthase, cytoplasmic | 2.3.3.10 | 0.447 | |
| 2std | CRP | Scytalone dehydratase | 4.2.1.94 | 0.447 | |
| 2vet | UMP | Thymidylate synthase | / | 0.447 | |
| 3aos | JH2 | Hemolymph juvenile hormone binding protein | / | 0.447 | |
| 3dy8 | 5GP | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.447 | |
| 3jsx | CC2 | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.447 | |
| 3lut | NAP | Voltage-gated potassium channel subunit beta-2 | / | 0.447 | |
| 4b63 | NAP | L-ornithine N(5)-monooxygenase | / | 0.447 | |
| 4d9e | LCS | D-cysteine desulfhydrase | / | 0.447 | |
| 4kq6 | DLZ | 6,7-dimethyl-8-ribityllumazine synthase | / | 0.447 | |
| 1drf | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.446 | |
| 1euy | QSI | Glutamine--tRNA ligase | 6.1.1.18 | 0.446 | |
| 1pwy | AC2 | Purine nucleoside phosphorylase | 2.4.2.1 | 0.446 | |
| 1qpl | 587 | Peptidyl-prolyl cis-trans isomerase FKBP1A | 5.2.1.8 | 0.446 | |
| 2g24 | 7IG | Renin | 3.4.23.15 | 0.446 | |
| 2reh | FAD | Nitroalkane oxidase | 1.7.3.1 | 0.446 | |
| 2v13 | C40 | Renin | 3.4.23.15 | 0.446 | |
| 2zfq | 45U | Prothrombin | 3.4.21.5 | 0.446 | |
| 3c35 | KAI | Glutamate receptor ionotropic, kainate 1 | / | 0.446 | |
| 3hdy | GDU | UDP-galactopyranose mutase | / | 0.446 | |
| 3l3l | L3L | Poly [ADP-ribose] polymerase 1 | 2.4.2.30 | 0.446 | |
| 4d89 | BXD | Beta-secretase 1 | 3.4.23.46 | 0.446 | |
| 4gv0 | 8ME | Poly [ADP-ribose] polymerase 3 | 2.4.2.30 | 0.446 | |
| 4hmz | 18T | dTDP-4-dehydro-6-deoxyglucose 3-epimerase | 5.1.3.27 | 0.446 | |
| 1b2r | FAD | Ferredoxin--NADP reductase | 1.18.1.2 | 0.445 | |
| 1oc1 | ASV | Isopenicillin N synthase | 1.21.3.1 | 0.445 | |
| 1ta6 | 177 | Prothrombin | 3.4.21.5 | 0.445 | |
| 1tvc | FDA | Methane monooxygenase component C | 1.14.13.25 | 0.445 | |
| 1xqp | 8HG | N-glycosylase/DNA lyase | / | 0.445 | |
| 2zgx | 29U | Prothrombin | 3.4.21.5 | 0.445 | |
| 3bv7 | NAP | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.445 | |
| 3dva | TPW | Pyruvate dehydrogenase E1 component subunit alpha | 1.2.4.1 | 0.445 | |
| 3dva | TPW | Pyruvate dehydrogenase E1 component subunit beta | 1.2.4.1 | 0.445 | |
| 3ojw | FMN | NADPH--cytochrome P450 reductase | / | 0.445 | |
| 3ryk | TYD | dTDP-4-dehydrorhamnose 3,5-epimerase | / | 0.445 | |
| 5doz | NDP | JamJ | / | 0.445 | |
| 1bk0 | ACV | Isopenicillin N synthase | 1.21.3.1 | 0.444 | |
| 1gpn | HUB | Acetylcholinesterase | 3.1.1.7 | 0.444 | |
| 1mcz | RMN | Benzoylformate decarboxylase | 4.1.1.7 | 0.444 | |
| 1xh6 | R94 | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.444 | |
| 1ygk | RRC | Pyridoxal kinase | 2.7.1.35 | 0.444 | |
| 2j3q | TFL | Acetylcholinesterase | 3.1.1.7 | 0.444 | |
| 2o12 | FMN | Chorismate synthase | / | 0.444 | |
| 2v3o | I26 | Prothrombin | 3.4.21.5 | 0.444 | |
| 2w6c | BM4 | Acetylcholinesterase | 3.1.1.7 | 0.444 | |
| 3hu2 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.444 | |
| 3jzd | NAD | Maleylacetate reductase | / | 0.444 | |
| 3s5w | FAD | L-ornithine N(5)-monooxygenase | / | 0.444 | |
| 3upt | TPP | Transketolase | / | 0.444 | |
| 1k27 | MTM | S-methyl-5'-thioadenosine phosphorylase | / | 0.443 | |
| 1mu8 | CDB | Prothrombin | 3.4.21.5 | 0.443 | |
| 1pz0 | NAP | Protein IolS | 1.1.1 | 0.443 | |
| 1qrp | HH0 | Pepsin A-4 | 3.4.23.1 | 0.443 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.443 | |
| 1swe | BTN | Streptavidin | / | 0.443 | |
| 1t4v | 14A | Prothrombin | 3.4.21.5 | 0.443 | |
| 1uae | UD1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | / | 0.443 | |
| 1upw | 444 | Oxysterols receptor LXR-beta | / | 0.443 | |
| 1ype | UIP | Prothrombin | 3.4.21.5 | 0.443 | |
| 1ypj | UIB | Prothrombin | 3.4.21.5 | 0.443 | |
| 3hl0 | NAD | Maleylacetate reductase | / | 0.443 | |
| 3n5y | XFL | Nitric oxide synthase, brain | 1.14.13.39 | 0.443 | |
| 3pdn | SFG | Histone-lysine N-methyltransferase SMYD3 | 2.1.1.43 | 0.443 | |
| 3udq | 09E | Beta-secretase 1 | 3.4.23.46 | 0.443 | |
| 4ayy | 9MX | Prothrombin | 3.4.21.5 | 0.443 | |
| 4b68 | FAD | L-ornithine N(5)-monooxygenase | / | 0.443 | |
| 4iom | FOL | Formate--tetrahydrofolate ligase | / | 0.443 | |
| 4irn | FAD | AnaB | / | 0.443 | |
| 4jx1 | CAH | Camphor 5-monooxygenase | 1.14.15.1 | 0.443 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.443 | |
| 4rp8 | ASC | Ascorbate-specific PTS system EIIC component | / | 0.443 | |
| 1fw0 | KAI | Glutamate receptor 2 | / | 0.442 | |
| 1h66 | RH1 | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.442 | |
| 1iol | EST | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.442 | |
| 1mkd | ZAR | cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 3.1.4.53 | 0.442 | |
| 1mu6 | CDA | Prothrombin | 3.4.21.5 | 0.442 | |
| 1ofv | FMN | Flavodoxin | / | 0.442 | |
| 1pz1 | NAP | General stress protein 69 | / | 0.442 | |
| 1rpw | DID | HTH-type transcriptional regulator QacR | / | 0.442 | |
| 1t2c | NAI | L-lactate dehydrogenase | 1.1.1.27 | 0.442 | |
| 1v3q | 2DI | Purine nucleoside phosphorylase | 2.4.2.1 | 0.442 | |
| 2a3c | PNX | Endochitinase B1 | 3.2.1.14 | 0.442 | |
| 2gz8 | F3F | Orf1a polyprotein | / | 0.442 | |
| 2ym1 | FAD | Phenylacetone monooxygenase | 1.14.13.92 | 0.442 | |
| 3egk | M18 | Prothrombin | 3.4.21.5 | 0.442 | |
| 3eon | 341 | Glutaryl-CoA dehydrogenase | / | 0.442 | |
| 3jsi | WTC | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.442 | |
| 4i1n | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.442 | |
| 4j0v | 1H7 | Beta-secretase 1 | 3.4.23.46 | 0.442 | |
| 4nwi | CTN | 7-methylguanosine phosphate-specific 5'-nucleotidase | / | 0.442 | |
| 4twn | B96 | Ephrin type-A receptor 3 | 2.7.10.1 | 0.442 | |
| 5cmx | 0G6 | Prothrombin | 3.4.21.5 | 0.442 | |
| 5fx2 | FMN | Flavodoxin | / | 0.442 | |
| 1d3p | BT3 | Prothrombin | 3.4.21.5 | 0.441 | |
| 1dx6 | GNT | Acetylcholinesterase | 3.1.1.7 | 0.441 | |
| 1p5r | COA | Formyl-CoA:oxalate CoA-transferase | / | 0.441 | |
| 1u2r | SO1 | Elongation factor 2 | / | 0.441 | |
| 1w19 | T5P | 6,7-dimethyl-8-ribityllumazine synthase | 2.5.1.78 | 0.441 | |
| 1w6r | GNT | Acetylcholinesterase | 3.1.1.7 | 0.441 | |
| 1wxj | IPL | Tryptophan synthase alpha chain | / | 0.441 | |
| 2a2x | NA9 | Prothrombin | 3.4.21.5 | 0.441 | |
| 2g28 | TDK | Pyruvate dehydrogenase E1 component | 1.2.4.1 | 0.441 | |
| 2il2 | LIX | Renin | 3.4.23.15 | 0.441 | |
| 2q1s | NAI | Putative nucleotide sugar epimerase/ dehydratase | / | 0.441 | |
| 2rqf | JH3 | Hemolymph juvenile hormone binding protein | / | 0.441 | |
| 2w3m | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.441 | |
| 2wmd | ZZ0 | NmrA-like family domain-containing protein 1 | / | 0.441 | |
| 3ge7 | AFQ | Queuine tRNA-ribosyltransferase | 2.4.2.29 | 0.441 | |
| 3ggs | 2FD | Purine nucleoside phosphorylase | 2.4.2.1 | 0.441 | |
| 3hj9 | FMN | Uncharacterized protein | / | 0.441 | |
| 3n0h | TOP | Dihydrofolate reductase | 1.5.1.3 | 0.441 | |
| 3nub | UD0 | UDP-2-acetamido-2-deoxy-3-oxo-D-glucuronate aminotransferase | 2.6.1.98 | 0.441 | |
| 3oqf | S51 | Renin | 3.4.23.15 | 0.441 | |
| 3r95 | ACO | MccE protein | / | 0.441 | |
| 4azy | 7F3 | Beta-secretase 1 | 3.4.23.46 | 0.441 | |
| 4b45 | GSP | Tubulin-like protein CetZ2 | / | 0.441 | |
| 4ge7 | 0K5 | Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial | 2.6.1.39 | 0.441 | |
| 4gh6 | LUO | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.441 | |
| 4glx | 0XS | DNA ligase | 6.5.1.2 | 0.441 | |
| 4jzr | 4JR | Egl nine homolog 1 | / | 0.441 | |
| 1d0l | BLG | Membrane-bound lytic murein transglycosylase B | 4.2.2.n1 | 0.440 | |
| 1dhf | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.440 | |
| 1fxv | PNN | Penicillin G acylase | 3.5.1.11 | 0.440 | |
| 1hfr | MOT | Dihydrofolate reductase | 1.5.1.3 | 0.440 | |
| 1j9z | FAD | NADPH--cytochrome P450 reductase | / | 0.440 | |
| 1odc | A8B | Acetylcholinesterase | 3.1.1.7 | 0.440 | |
| 1rfg | GMP | Purine nucleoside phosphorylase | 2.4.2.1 | 0.440 | |
| 1trk | TPP | Transketolase 1 | 2.2.1.1 | 0.440 | |
| 1ut6 | A8N | Acetylcholinesterase | 3.1.1.7 | 0.440 | |
| 1zgb | A1E | Acetylcholinesterase | 3.1.1.7 | 0.440 | |
| 2cft | PLP | Pyridoxal phosphate phosphatase | / | 0.440 | |
| 2ea1 | GPG | Ribonuclease I | 3.1.27.6 | 0.440 | |
| 2fm5 | M99 | cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 3.1.4.53 | 0.440 | |
| 2q1w | NAD | Putative nucleotide sugar epimerase/ dehydratase | / | 0.440 | |
| 2rlc | CHD | Choloylglycine hydrolase | 3.5.1.24 | 0.440 | |
| 2uuk | 897 | Prothrombin | 3.4.21.5 | 0.440 | |
| 2xi4 | AFT | Acetylcholinesterase | 3.1.1.7 | 0.440 | |
| 2xlr | NAP | Putative flavin-containing monooxygenase | / | 0.440 | |
| 3a1c | ACP | Probable copper-exporting P-type ATPase A | 3.6.3.54 | 0.440 | |
| 3ad9 | NAD | Subunit alpha of sarocosine oxidase | / | 0.440 | |
| 3b4y | F42 | F420-dependent glucose-6-phosphate dehydrogenase | / | 0.440 | |
| 3fkt | SII | Beta-secretase 1 | 3.4.23.46 | 0.440 | |
| 3jun | AJD | Phenazine biosynthesis protein A/B | / | 0.440 | |
| 3nhp | HGZ | Ribosyldihydronicotinamide dehydrogenase [quinone] | / | 0.440 | |
| 3uzw | NAP | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.440 | |
| 4bfw | ZVW | Pantothenate kinase | 2.7.1.33 | 0.440 | |
| 4kwh | NAP | Reductase homolog | / | 0.440 | |
| 4p9d | TMP | Deoxycytidylate deaminase | / | 0.440 | |
| 8cat | NDP | Catalase | 1.11.1.6 | 0.440 |