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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3k2bNADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic1.2.1.13

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3k2bNADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic1.2.1.131.000
3dbvNADGlyceraldehyde-3-phosphate dehydrogenase/0.594
3b20NADGlyceraldehyde-3-phosphate dehydrogenase/0.565
3cmcNADGlyceraldehyde-3-phosphate dehydrogenase/0.523
1nq5NADGlyceraldehyde-3-phosphate dehydrogenase/0.521
3lvfNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.521
3qv1NADGlyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic1.2.1.130.521
3ksdNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.517
2pkrNDPGlyceraldehyde-3-phosphate dehydrogenase A, chloroplastic1.2.1.130.516
1gd1NADGlyceraldehyde-3-phosphate dehydrogenase/0.515
1qxsNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.515
1gypNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.513
1nptNADGlyceraldehyde-3-phosphate dehydrogenase/0.513
1ml3NADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.512
3e5rNADGlyceraldehyde-3-phosphate dehydrogenase 1, cytosolic1.2.1.120.512
3hjaNADGlyceraldehyde-3-phosphate dehydrogenase/0.511
3cpsNADGlyceraldehyde-3-phosphate dehydrogenase/0.510
1a7kNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.509
3cifNADGlyceraldehyde-3-phosphate dehydrogenase/0.508
3l4sNADGlyceraldehyde-3-phosphate dehydrogenase 1/0.507
4k9dNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.499
4p8rNADGlyceraldehyde-3-phosphate dehydrogenase/0.494
1znqNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.484
4o59NADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.483
1nqaNADGlyceraldehyde-3-phosphate dehydrogenase/0.480
3docNADGlyceraldehyde-3-phosphate dehydrogenase/0.480
1nqoNADGlyceraldehyde-3-phosphate dehydrogenase/0.479
1cerNADGlyceraldehyde-3-phosphate dehydrogenase/0.476
2vynNADGlyceraldehyde-3-phosphate dehydrogenase A/0.475
1u8fNADGlyceraldehyde-3-phosphate dehydrogenase1.2.1.120.468
2vyvNADGlyceraldehyde-3-phosphate dehydrogenase A/0.458
3zdfNADGlyceraldehyde-3-phosphate dehydrogenase/0.453
3dmtNADGlyceraldehyde-3-phosphate dehydrogenase, glycosomal1.2.1.120.450