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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3jypNADQuinate/shikimate dehydrogenase (NAD(+))

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3jypNADQuinate/shikimate dehydrogenase (NAD(+))/1.000
3jyqNADQuinate/shikimate dehydrogenase (NAD(+))/0.698
3jyoNADQuinate/shikimate dehydrogenase (NAD(+))/0.687
1o9bNAIQuinate/shikimate dehydrogenase/0.549
1vi2NADQuinate/shikimate dehydrogenase/0.517
3t4eNADQuinate/shikimate dehydrogenase/0.513
4q71FADBifunctional protein PutA/0.500
4yaw2AMNADPH--cytochrome P450 reductase/0.495
2cy0NAPShikimate dehydrogenase (NADP(+))/0.487
2hk9NAPShikimate dehydrogenase (NADP(+))/0.476
3gwfNAPCyclohexanone monooxygenase/0.468
3tnlNADShikimate dehydrogenase (NADP(+))/0.468
2y1oT26UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.467
1npdNADQuinate/shikimate dehydrogenase/0.465
2ev9NAPShikimate dehydrogenase (NADP(+))/0.464
2vn1FK5Peptidylprolyl isomerase/0.462
1nvtNAPShikimate dehydrogenase (NADP(+))/0.457
2jn3JN3Fatty acid-binding protein, liver/0.454
1nytNAPShikimate dehydrogenase (NADP(+))/0.452
4y7cNAPNADPH--cytochrome P450 reductase/0.451
3p74FMNPentaerythritol tetranitrate reductase/0.450
3gfbNADL-threonine 3-dehydrogenase/0.449
4bgePYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.448
4xwtU5PRibonuclease J/0.447
1bwsNDPGDP-L-fucose synthase/0.446
3h3t16HCollagen type IV alpha-3-binding protein/0.445
1nzdUPGDNA beta-glucosyltransferase/0.444
1u2gAPRNAD(P) transhydrogenase subunit alpha part 11.6.1.20.442
3uzwNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.442
3phiNDPShikimate dehydrogenase (NADP(+))/0.440