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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3jvvACPTwitching mobility protein

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3jvvACPTwitching mobility protein/1.000
1ipeNDPTropinone reductase 21.1.1.2360.461
1vl8NAPOxidoreductase, short chain dehydrogenase/reductase family/0.458
1snyNAPLD36273p/0.448
4fc7NAPPeroxisomal 2,4-dienoyl-CoA reductase1.3.1.340.447
4rf2NAPNADPH dependent R-specific alcohol dehydrogenase/0.445
4xd2NAIAlcohol dehydrogenase E chain1.1.1.10.441
2dknNAI3-alpha-hydroxysteroid dehydrogenase/0.440