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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3jv7NADSecondary alcohol dehydrogenase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3jv7NADSecondary alcohol dehydrogenase/1.000
2xaaNADSecondary alcohol dehydrogenase/0.615
4c4oNADSADH/0.544
1h2bNAJNAD-dependent alcohol dehydrogenase/0.507
3wleNAD(R)-specific carbonyl reductase/0.500
3cosNADAlcohol dehydrogenase 41.1.1.10.482
4dlbNADS-(hydroxymethyl)glutathione dehydrogenase/0.478
4jjiNADAlcohol dehydrogenase class-3/0.478
1ma0NADAlcohol dehydrogenase class-31.1.1.10.475
1e3lNADAlcohol dehydrogenase 41.1.1.10.474
4nfhNAJAlcohol dehydrogenase E chain1.1.1.10.469
2oxiNADAlcohol dehydrogenase E chain1.1.1.10.465
2fzeAPRAlcohol dehydrogenase class-31.1.1.10.464
4rquNADAlcohol dehydrogenase class-P/0.462
1cdoNADAlcohol dehydrogenase 11.1.1.10.460
5kj6NAJAlcohol dehydrogenase E chain1.1.1.10.460
2ohxNADAlcohol dehydrogenase E chain1.1.1.10.457
1hetNADAlcohol dehydrogenase E chain1.1.1.10.453
1ht0NADAlcohol dehydrogenase 1C1.1.1.10.449
4dwvNAJAlcohol dehydrogenase E chain1.1.1.10.449
5cdgNAJAlcohol dehydrogenase E chain1.1.1.10.449
1a71NADAlcohol dehydrogenase E chain1.1.1.10.448
5kjcNAJAlcohol dehydrogenase E chain1.1.1.10.448
1f8fNADBenzyl alcohol dehydrogenase/0.447
1lluNADAlcohol dehydrogenase/0.447
4gl4NAIAlcohol dehydrogenase class-3/0.447
4xd2NAIAlcohol dehydrogenase E chain1.1.1.10.446
1hszNADAlcohol dehydrogenase 1B1.1.1.10.442
3ukoNADAlcohol dehydrogenase class-3/0.442
1adcPADAlcohol dehydrogenase E chain1.1.1.10.440