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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3ioeA7DPantothenate synthetase6.3.2.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3ioeA7DPantothenate synthetase6.3.2.11.000
3iocA5DPantothenate synthetase6.3.2.10.675
3ivxFG6Pantothenate synthetase6.3.2.10.646
1n2iPAJPantothenate synthetase6.3.2.10.625
1n2hPAJPantothenate synthetase6.3.2.10.603
3cow52HPantothenate synthetase6.3.2.10.598
2x3fAPCPantothenate synthetase/0.579
5hg0SAMPantothenate synthetase/0.573
3coy53HPantothenate synthetase6.3.2.10.560
1n2eAPCPantothenate synthetase6.3.2.10.556
3iobA4DPantothenate synthetase6.3.2.10.553
3isjA8DPantothenate synthetase6.3.2.10.552
3coz54HPantothenate synthetase6.3.2.10.551
1n2gAPCPantothenate synthetase6.3.2.10.536
3ag6PAJPantothenate synthetase/0.521
3iodA6DPantothenate synthetase6.3.2.10.518
3ivcFG4Pantothenate synthetase6.3.2.10.500
1n2bPAFPantothenate synthetase6.3.2.10.493
1n2jPAFPantothenate synthetase6.3.2.10.490
4wsoNADProbable nicotinate-nucleotide adenylyltransferase/0.488
3ivgFG5Pantothenate synthetase6.3.2.10.478
1k4mNADNicotinate-nucleotide adenylyltransferase2.7.7.180.471
3imeBZ2Pantothenate synthetase6.3.2.10.465
4de50JDPantothenate synthetase6.3.2.10.464
1nuuNADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.463
2qjoNADBifunctional NMN adenylyltransferase/Nudix hydrolase2.7.7.10.454
3imgBZ2Pantothenate synthetase6.3.2.10.451
1r6uTYMTryptophan--tRNA ligase, cytoplasmic6.1.1.20.446
1vbmYSATyrosine--tRNA ligase6.1.1.10.446
3qttANPPantothenate synthetase/0.441
2qtrNXXProbable nicotinate-nucleotide adenylyltransferase/0.440