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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3iobA4DPantothenate synthetase6.3.2.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3iobA4DPantothenate synthetase6.3.2.11.000
3iodA6DPantothenate synthetase6.3.2.10.787
3isjA8DPantothenate synthetase6.3.2.10.692
3coz54HPantothenate synthetase6.3.2.10.668
3imeBZ2Pantothenate synthetase6.3.2.10.656
3ivgFG5Pantothenate synthetase6.3.2.10.648
3coy53HPantothenate synthetase6.3.2.10.647
3iocA5DPantothenate synthetase6.3.2.10.638
3ioeA7DPantothenate synthetase6.3.2.10.616
4ddhMS0Pantothenate synthetase6.3.2.10.592
5hg0SAMPantothenate synthetase/0.588
4de50JDPantothenate synthetase6.3.2.10.577
1n2iPAJPantothenate synthetase6.3.2.10.575
2x3fAPCPantothenate synthetase/0.571
3ivxFG6Pantothenate synthetase6.3.2.10.564
1n2hPAJPantothenate synthetase6.3.2.10.559
3ag6PAJPantothenate synthetase/0.557
3imgBZ3Pantothenate synthetase6.3.2.10.550
3imgBZ2Pantothenate synthetase6.3.2.10.546
3cow52HPantothenate synthetase6.3.2.10.538
1n2gAPCPantothenate synthetase6.3.2.10.528
2a84ATPPantothenate synthetase6.3.2.10.528
4wsoNADProbable nicotinate-nucleotide adenylyltransferase/0.525
1nuuNADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.507
1n2eAPCPantothenate synthetase6.3.2.10.506
3ivcFG4Pantothenate synthetase6.3.2.10.502
3zxiTYATyrosine--tRNA ligase, mitochondrial6.1.1.10.497
5kwvANPPantothenate synthetase/0.493
3ts1TYATyrosine--tRNA ligase6.1.1.10.489
1k4mNADNicotinate-nucleotide adenylyltransferase2.7.7.180.478
2pidYSATyrosine--tRNA ligase, mitochondrial6.1.1.10.476
1vbmYSATyrosine--tRNA ligase6.1.1.10.475
4bfzZVZPantothenate kinase2.7.1.330.473
1nuqNXXNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.470
3kt3TYMTryptophan--tRNA ligase, cytoplasmic6.1.1.20.469
1n2jPAFPantothenate synthetase6.3.2.10.463
1gaxVAAValine--tRNA ligase6.1.1.90.460
1r6uTYMTryptophan--tRNA ligase, cytoplasmic6.1.1.20.459
1kp3ATPArgininosuccinate synthase6.3.4.50.456
1n2bPAFPantothenate synthetase6.3.2.10.456
1xddAAYIntegrin alpha-L/0.456
3qfrFMNNADPH--cytochrome P450 reductase/0.456
2qjoNADBifunctional NMN adenylyltransferase/Nudix hydrolase2.7.7.10.454
1jil485Tyrosine--tRNA ligase/0.450
1zp4FAD5,10-methylenetetrahydrofolate reductase1.5.1.200.450
2qtrNXXProbable nicotinate-nucleotide adenylyltransferase/0.449
4g9kFADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial1.6.5.90.449
1xe55FEPlasmepsin-23.4.23.390.445
2yj5ATPCopper-transporting ATPase/0.445
3clrFADElectron transfer flavoprotein subunit alpha/0.444
1rbqKEUTrifunctional purine biosynthetic protein adenosine-32.1.2.20.442
3qttANPPantothenate synthetase/0.442
4mvcCDCCholine-phosphate cytidylyltransferase A/0.442
2h2aDNDProbable nicotinate-nucleotide adenylyltransferase/0.441
3dynPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.441
4i5eNAPAlclohol dehydrogenase/short-chain dehydrogenase/0.441