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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3igvB80Genome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3igvB80Genome polyprotein2.7.7.481.000
3br9DEYGenome polyprotein2.7.7.480.634
3u4r08FGenome polyprotein2.7.7.480.627
3bsc2PDGenome polyprotein2.7.7.480.612
3d5m4MSGenome polyprotein2.7.7.480.606
3h59H59Genome polyprotein2.7.7.480.600
3g86T18Genome polyprotein2.7.7.480.592
4mk928RGenome polyprotein2.7.7.480.592
4mka2AYGenome polyprotein2.7.7.480.592
3hkwIX6Genome polyprotein2.7.7.480.587
3tyvHI3Genome polyprotein2.7.7.480.568
2giqNN2Genome polyprotein2.7.7.480.567
3h2lYAKGenome polyprotein2.7.7.480.566
3gynB42Genome polyprotein2.7.7.480.562
3hkyIX6Genome polyprotein2.7.7.480.550
4mkb28VGenome polyprotein2.7.7.480.544
3csoXNIGenome polyprotein2.7.7.480.535
3uph0C1Genome polyprotein2.7.7.480.533
4eaw0NQGenome polyprotein2.7.7.480.513
3u4o08EGenome polyprotein2.7.7.480.511
3d28B34Genome polyprotein2.7.7.480.494
2yoj8Y6Genome polyprotein2.7.7.480.492
3ska053Genome polyprotein2.7.7.480.490
3gnvXNZGenome polyprotein2.7.7.480.478
3ske054Genome polyprotein2.7.7.480.471
2gc8885Polyprotein/0.466