Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3iesM24Luciferin 4-monooxygenase1.13.12.7

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3iesM24Luciferin 4-monooxygenase1.13.12.71.000
3rix923Luciferin 4-monooxygenase1.13.12.70.581
2d1sSLULuciferin 4-monooxygenase1.13.12.70.502
1ojtFADDihydrolipoyl dehydrogenase/0.458
2qzlIXSBeta-secretase 13.4.23.460.458
3slkNDPPolyketide synthase extender module 2/0.455
3gdpFAD(R)-mandelonitrile lyase 24.1.2.100.450
3q43D66M1 family aminopeptidase3.4.110.450
5dozNDPJamJ/0.449
5dp2NAPCurF/0.448
1xudPB4Collagenase 33.4.240.446
4d89BXDBeta-secretase 13.4.23.460.444
3q44D50M1 family aminopeptidase3.4.110.442
2tpsTPSThiamine-phosphate synthase/0.441