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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3id8MRKGlucokinase2.7.1.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3id8MRKGlucokinase2.7.1.21.000
4mleVO1Glucokinase2.7.1.20.581
1v4sMRKGlucokinase2.7.1.20.530
3a0iAJIGlucokinase2.7.1.20.525
4l3q926Glucokinase2.7.1.20.519
3vev0H4Glucokinase2.7.1.20.507
3vey0H5Glucokinase2.7.1.20.489
3h1vTK1Glucokinase2.7.1.20.484
4mlhVO2Glucokinase2.7.1.20.483
3fr0AJBGlucokinase2.7.1.20.482
4ixc1JDGlucokinase2.7.1.20.460
3f9mMRKGlucokinase2.7.1.20.459
4iwv1J9Glucokinase2.7.1.20.458
4dhyS41Glucokinase2.7.1.20.457
4q73FADBifunctional protein PutA/0.445
4bb6HD1Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.441