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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3hkwIX6Genome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3hkwIX6Genome polyprotein2.7.7.481.000
3u4r08FGenome polyprotein2.7.7.480.529
4mk928RGenome polyprotein2.7.7.480.522
3igvB80Genome polyprotein2.7.7.480.513
3tyvHI3Genome polyprotein2.7.7.480.507
4mka2AYGenome polyprotein2.7.7.480.497
3bsc2PDGenome polyprotein2.7.7.480.496
3g86T18Genome polyprotein2.7.7.480.494
3d5m4MSGenome polyprotein2.7.7.480.491
3hkyIX6Genome polyprotein2.7.7.480.485
3h59H59Genome polyprotein2.7.7.480.479
2giqNN2Genome polyprotein2.7.7.480.475
3br9DEYGenome polyprotein2.7.7.480.473
4mkb28VGenome polyprotein2.7.7.480.470
3uph0C1Genome polyprotein2.7.7.480.450
3h2lYAKGenome polyprotein2.7.7.480.449
3gynB42Genome polyprotein2.7.7.480.442