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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3hazFADBifunctional protein PutA

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3hazFADBifunctional protein PutA/1.000
4q73FADBifunctional protein PutA/0.589
4q72FADBifunctional protein PutA/0.587
4q71FADBifunctional protein PutA/0.580
1tj2FADBifunctional protein PutA1.5.5.20.513
2fznFADBifunctional protein PutA1.5.5.20.502
4o8aFADBifunctional protein PutA1.2.1.880.495
1tj1FADBifunctional protein PutA1.5.5.20.494
2fzmFADBifunctional protein PutA1.5.5.20.493
1tj0FADBifunctional protein PutA1.5.5.20.484
3e2sFADBifunctional protein PutA1.5.5.20.472