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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3h5sH5SGenome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3h5sH5SGenome polyprotein2.7.7.481.000
3h5uH5UGenome polyprotein2.7.7.480.818
3cdeN3HGenome polyprotein2.7.7.480.627
4ih61EPGenome polyprotein2.7.7.480.625
3d5m4MSGenome polyprotein2.7.7.480.612
4mk728OGenome polyprotein2.7.7.480.605
3cvkN34Genome polyprotein2.7.7.480.603
3tyvHI3Genome polyprotein2.7.7.480.603
1z4uPH9Polyprotein/0.596
3cwj321Genome polyprotein2.7.7.480.592
2gc8885Polyprotein/0.587
3u4o08EGenome polyprotein2.7.7.480.587
4ih71ERGenome polyprotein2.7.7.480.586
2yoj8Y6Genome polyprotein2.7.7.480.583
3bsa1PDGenome polyprotein2.7.7.480.583
3h2lYAKGenome polyprotein2.7.7.480.573
2fvc888Polyprotein/0.568
3gnvXNZGenome polyprotein2.7.7.480.568
3ske054Genome polyprotein2.7.7.480.567
3uph0C1Genome polyprotein2.7.7.480.567
3gnwXNCGenome polyprotein2.7.7.480.563
3golXNDGenome polyprotein2.7.7.480.563
3ska053Genome polyprotein2.7.7.480.563
3csoXNIGenome polyprotein2.7.7.480.562
4iz02BIGenome polyprotein2.7.7.480.558
3h98B5PGenome polyprotein2.7.7.480.553
3upi0C2Genome polyprotein2.7.7.480.548
4mk828QGenome polyprotein2.7.7.480.548
3co93MSGenome polyprotein2.7.7.480.544
3e51N35Genome polyprotein2.7.7.480.543
1yvfPH7Polyprotein/0.534
4eaw0NQGenome polyprotein2.7.7.480.532
3fqk79ZGenome polyprotein2.7.7.480.491
2qe5617Polyprotein/0.462
2y1tDUDSPBc2 prophage-derived deoxyuridine 5'-triphosphate nucleotidohydrolase YosS3.6.1.230.445