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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3h2lYAKGenome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3h2lYAKGenome polyprotein2.7.7.481.000
3d5m4MSGenome polyprotein2.7.7.480.673
3h59H59Genome polyprotein2.7.7.480.631
3u4r08FGenome polyprotein2.7.7.480.631
3g86T18Genome polyprotein2.7.7.480.620
3igvB80Genome polyprotein2.7.7.480.612
3tyvHI3Genome polyprotein2.7.7.480.604
3hkyIX6Genome polyprotein2.7.7.480.598
2giqNN2Genome polyprotein2.7.7.480.590
4mk928RGenome polyprotein2.7.7.480.581
3hkwIX6Genome polyprotein2.7.7.480.573
3bsc2PDGenome polyprotein2.7.7.480.566
3d28B34Genome polyprotein2.7.7.480.566
4mka2AYGenome polyprotein2.7.7.480.564
3csoXNIGenome polyprotein2.7.7.480.559
4eaw0NQGenome polyprotein2.7.7.480.549
3gynB42Genome polyprotein2.7.7.480.544
4mkb28VGenome polyprotein2.7.7.480.542
3br9DEYGenome polyprotein2.7.7.480.537
3uph0C1Genome polyprotein2.7.7.480.531
3ska053Genome polyprotein2.7.7.480.505
3u4o08EGenome polyprotein2.7.7.480.504
3gnvXNZGenome polyprotein2.7.7.480.486
3ske054Genome polyprotein2.7.7.480.483
2yoj8Y6Genome polyprotein2.7.7.480.469
2gc8885Polyprotein/0.450
3upi0C2Genome polyprotein2.7.7.480.444
4mk728OGenome polyprotein2.7.7.480.442