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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3gyjFADCholesterol oxidase1.1.3.6

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3gyjFADCholesterol oxidase1.1.3.61.000
4xxgFADCholesterol oxidase1.1.3.60.850
3gyiFADCholesterol oxidase1.1.3.60.839
4rekFADCholesterol oxidase1.1.3.60.827
4xwrFADCholesterol oxidase1.1.3.60.826
1mxtFAECholesterol oxidase1.1.3.60.817
1n4uFAECholesterol oxidase1.1.3.60.807
1b8sFADCholesterol oxidase1.1.3.60.798
1ijhFADCholesterol oxidase1.1.3.60.787
4u2lSFDCholesterol oxidase1.1.3.60.762
1b4vFADCholesterol oxidase1.1.3.60.699
1n4vFADCholesterol oxidase1.1.3.60.687
1cboFADCholesterol oxidase1.1.3.60.664
3cnjFADCholesterol oxidase1.1.3.60.664
4u2sFDACholesterol oxidase1.1.3.60.654
1cc2FADCholesterol oxidase1.1.3.60.640
1n4wFADCholesterol oxidase1.1.3.60.617
3b6dFAECholesterol oxidase1.1.3.60.604
1n1pFADCholesterol oxidase1.1.3.60.579
3coxFADCholesterol oxidase1.1.3.60.573
4u2tFADCholesterol oxidase1.1.3.60.553
4qi4FADCellobiose dehydrogenase/0.539
4qi5FADCellobiose dehydrogenase/0.539
4qi7FADCellobiose dehydrogenase/0.538
2gewFADCholesterol oxidase1.1.3.60.499
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.494
4udqFAD5-(hydroxymethyl)furfural oxidase/0.478
1galFADGlucose oxidase1.1.3.40.470
5hsaFASAlcohol oxidase 11.1.3.130.468
4mihFADPyranose 2-oxidase1.1.3.100.462
4udrFAD5-(hydroxymethyl)furfural oxidase/0.461
1ju2FAD(R)-mandelonitrile lyase 24.1.2.100.447
1cf3FADGlucose oxidase1.1.3.40.444