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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3gyeFMNDihydroorotate dehydrogenase (fumarate)

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3gyeFMNDihydroorotate dehydrogenase (fumarate)/1.000
4ef8FMNDihydroorotate dehydrogenase (fumarate)/0.658
2djxFMNDihydroorotate dehydrogenase (fumarate)1.3.98.10.654
4ef9FMNDihydroorotate dehydrogenase (fumarate)/0.628
4wzhFMNDihydroorotate dehydrogenase (fumarate)/0.625
2djlFMNDihydroorotate dehydrogenase (fumarate)1.3.98.10.595
3oixFMNDihydroorotate dehydrogenase/0.586
3c3nFMNDihydroorotate dehydrogenase (fumarate)1.3.98.10.584
1jueFMNDihydroorotate dehydrogenase A (fumarate)1.3.98.10.537
2bslFMNDihydroorotate dehydrogenase A (fumarate)1.3.98.10.520
1dorFMNDihydroorotate dehydrogenase A (fumarate)1.3.98.10.516