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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3golXNDGenome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3golXNDGenome polyprotein2.7.7.481.000
3uph0C1Genome polyprotein2.7.7.480.642
3u4o08EGenome polyprotein2.7.7.480.636
4ih71ERGenome polyprotein2.7.7.480.629
3csoXNIGenome polyprotein2.7.7.480.624
4mk728OGenome polyprotein2.7.7.480.618
3tyvHI3Genome polyprotein2.7.7.480.610
2gc8885Polyprotein/0.601
2yoj8Y6Genome polyprotein2.7.7.480.598
3bsc2PDGenome polyprotein2.7.7.480.573
1z4uPH9Polyprotein/0.570
3ska053Genome polyprotein2.7.7.480.568
4ih61EPGenome polyprotein2.7.7.480.568
4iz02BIGenome polyprotein2.7.7.480.568
3ske054Genome polyprotein2.7.7.480.567
3h59H59Genome polyprotein2.7.7.480.562
3cdeN3HGenome polyprotein2.7.7.480.558
4mk928RGenome polyprotein2.7.7.480.556
3e51N35Genome polyprotein2.7.7.480.555
3upi0C2Genome polyprotein2.7.7.480.555
3bsa1PDGenome polyprotein2.7.7.480.554
3cwj321Genome polyprotein2.7.7.480.553
2fvc888Polyprotein/0.548
3gnwXNCGenome polyprotein2.7.7.480.546
3h5uH5UGenome polyprotein2.7.7.480.543
3gnvXNZGenome polyprotein2.7.7.480.536
4eaw0NQGenome polyprotein2.7.7.480.536
3h98B5PGenome polyprotein2.7.7.480.534
3cvkN34Genome polyprotein2.7.7.480.533
3co93MSGenome polyprotein2.7.7.480.531
3h5sH5SGenome polyprotein2.7.7.480.529
4mk828QGenome polyprotein2.7.7.480.529
3d28B34Genome polyprotein2.7.7.480.525
3br9DEYGenome polyprotein2.7.7.480.519
3g86T18Genome polyprotein2.7.7.480.516
1yvfPH7Polyprotein/0.456
2qe5617Polyprotein/0.454
2eudGCQRibonucleoside-diphosphate reductase large chain 11.17.4.10.446
4xguADPPutative pachytene checkpoint protein 2/0.445