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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3gnwXNCGenome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3gnwXNCGenome polyprotein2.7.7.481.000
3d28B34Genome polyprotein2.7.7.480.557
3cvkN34Genome polyprotein2.7.7.480.556
4ih61EPGenome polyprotein2.7.7.480.554
3bsa1PDGenome polyprotein2.7.7.480.552
3tyvHI3Genome polyprotein2.7.7.480.549
3hkyIX6Genome polyprotein2.7.7.480.541
3h59H59Genome polyprotein2.7.7.480.536
3u4o08EGenome polyprotein2.7.7.480.533
3d5m4MSGenome polyprotein2.7.7.480.519
3upi0C2Genome polyprotein2.7.7.480.519
1z4uPH9Polyprotein/0.516
3gnvXNZGenome polyprotein2.7.7.480.514
4eaw0NQGenome polyprotein2.7.7.480.514
2gc8885Polyprotein/0.513
3ska053Genome polyprotein2.7.7.480.511
3h2lYAKGenome polyprotein2.7.7.480.504
4mk728OGenome polyprotein2.7.7.480.504
2yoj8Y6Genome polyprotein2.7.7.480.502
3csoXNIGenome polyprotein2.7.7.480.501
4ih71ERGenome polyprotein2.7.7.480.500
4mk928RGenome polyprotein2.7.7.480.498
3h5sH5SGenome polyprotein2.7.7.480.496
3golXNDGenome polyprotein2.7.7.480.493
3h5uH5UGenome polyprotein2.7.7.480.490
3igvB80Genome polyprotein2.7.7.480.488
3ske054Genome polyprotein2.7.7.480.483
3g86T18Genome polyprotein2.7.7.480.482
4mk828QGenome polyprotein2.7.7.480.479
3cwj321Genome polyprotein2.7.7.480.473
4iz02BIGenome polyprotein2.7.7.480.470
3cdeN3HGenome polyprotein2.7.7.480.465
3co93MSGenome polyprotein2.7.7.480.465
1yvfPH7Polyprotein/0.460
2fvc888Polyprotein/0.459
2giqNN2Genome polyprotein2.7.7.480.456
3e51N35Genome polyprotein2.7.7.480.447