Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3gmbFAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3gmbFAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase/1.000
3almFAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase/0.639
4jy2FAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase/0.625
4h2pFAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase/0.613
3aljFAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase/0.591
3allFAD2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase/0.510
4bk2FADProbable salicylate monooxygenase/0.498
4j34FADKynurenine 3-monooxygenase/0.474
3rp8FADFAD-dependent urate hydroxylase/0.462
4j36FADKynurenine 3-monooxygenase/0.457
4j2wFADKynurenine 3-monooxygenase/0.440