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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3gkaFMNN-ethylmaleimide reductase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3gkaFMNN-ethylmaleimide reductase/1.000
4jicFMNGTN Reductase/0.572
4tmbFMNOld yellow enzyme/0.557
1h50FMNPentaerythritol tetranitrate reductase/0.541
3f03FMNPentaerythritol tetranitrate reductase/0.541
2abbFMNPentaerythritol tetranitrate reductase/0.540
1icqFMN12-oxophytodienoate reductase 11.3.1.420.528
1h63FMNPentaerythritol tetranitrate reductase/0.527
1icpFMN12-oxophytodienoate reductase 11.3.1.420.525
1vjiFMN12-oxophytodienoate reductase 11.3.1.420.524
1vyrFMNPentaerythritol tetranitrate reductase/0.522
3p82FMNPentaerythritol tetranitrate reductase/0.522
3p74FMNPentaerythritol tetranitrate reductase/0.513
3p62FMNPentaerythritol tetranitrate reductase/0.510
3atzFMNProstaglandin F2a synthase/0.506
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.505
4a3uFMNNADH:flavin oxidoreductase/NADH oxidase/0.501
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.500
4e2bFMNDehydrogenase/0.500
4rnvFMNNADPH dehydrogenase 11.6.99.10.498
1icsFMN12-oxophytodienoate reductase 11.3.1.420.489
2q3rFMN12-oxophytodienoate reductase 11.3.1.420.489
3hgsFMN12-oxophytodienoate reductase 31.3.1.420.489
4e2dFMNDehydrogenase/0.489
2hs8FMN12-oxophytodienoate reductase 31.3.1.420.483
1q45FMN12-oxophytodienoate reductase 31.3.1.420.480
3p84FMNPentaerythritol tetranitrate reductase/0.479
3p8jFMNPentaerythritol tetranitrate reductase/0.479
1bwlFMNNADPH dehydrogenase 11.6.99.10.478
1h51FMNPentaerythritol tetranitrate reductase/0.476
4rnuFMNNADPH dehydrogenase 11.6.99.10.475
3tjlFMNNADPH dehydrogenase/0.469
2hs6FMN12-oxophytodienoate reductase 31.3.1.420.466
1nuuNADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.462
1oyaFMNNADPH dehydrogenase 11.6.99.10.462
1oycFMNNADPH dehydrogenase 11.6.99.10.460
3p67FMNPentaerythritol tetranitrate reductase/0.460
1bwkFMNNADPH dehydrogenase 11.6.99.10.457
3atyFMNProstaglandin F2a synthase/0.457
4m5pFMNNADPH dehydrogenase/0.457
1nuqNXXNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.456
4h6kFMNNADPH dehydrogenase 11.6.99.10.456
4rnwFMNNADPH dehydrogenase 11.6.99.10.453
3n19FNRXenobiotic reductase/0.450
4rnxFMNNADPH dehydrogenase 11.6.99.10.450
1g6kNADGlucose 1-dehydrogenase1.1.1.470.442
2q3oFMN12-oxophytodienoate reductase 31.3.1.420.441
3mpiFADGlutaryl-CoA dehydrogenase1.3.99.320.441
1v0jFADUDP-galactopyranose mutase5.4.99.90.440