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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3ge7AFQQueuine tRNA-ribosyltransferase2.4.2.29

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3ge7AFQQueuine tRNA-ribosyltransferase2.4.2.291.000
4gkt0O1Queuine tRNA-ribosyltransferase2.4.2.290.619
3sm0AEKQueuine tRNA-ribosyltransferase2.4.2.290.566
4gh10WXQueuine tRNA-ribosyltransferase2.4.2.290.565
1y5vNE8Queuine tRNA-ribosyltransferase2.4.2.290.560
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.290.554
4gh30EVQueuine tRNA-ribosyltransferase2.4.2.290.546
4gi40EXQueuine tRNA-ribosyltransferase2.4.2.290.546
1q63AIQQueuine tRNA-ribosyltransferase2.4.2.290.526
4giy0WYQueuine tRNA-ribosyltransferase2.4.2.290.523
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.290.520
1k4gAIQQueuine tRNA-ribosyltransferase2.4.2.290.505
3gc4AAQQueuine tRNA-ribosyltransferase2.4.2.290.503
4fps0UXQueuine tRNA-ribosyltransferase2.4.2.290.495
4fr10V2Queuine tRNA-ribosyltransferase2.4.2.290.495
4fsa0V3Queuine tRNA-ribosyltransferase2.4.2.290.494
1y5wNEZQueuine tRNA-ribosyltransferase2.4.2.290.485
1q66KMBQueuine tRNA-ribosyltransferase2.4.2.290.479
3gc52MQQueuine tRNA-ribosyltransferase2.4.2.290.457
1f3eDPZQueuine tRNA-ribosyltransferase2.4.2.290.452
4ug91EWNitric oxide synthase oxygenase1.14.13.1650.451
4gki0JNAminoglycoside 3'-phosphotransferase AphA1-IAB/0.448
4q8pCKRQueuine tRNA-ribosyltransferase2.4.2.290.442
4fewPP2Aminoglycoside 3'-phosphotransferase AphA1-IAB/0.441