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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3g2lLEWGlycogen phosphorylase, muscle form2.4.1.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
3g2lLEWGlycogen phosphorylase, muscle form2.4.1.11.000
2qlnF59Glycogen phosphorylase, muscle form2.4.1.10.664
4ekeD1IGlycogen phosphorylase, muscle form2.4.1.10.642
1k08BZDGlycogen phosphorylase, muscle form2.4.1.10.576
3ms421NGlycogen phosphorylase, muscle form2.4.1.10.561
3zcsCAWGlycogen phosphorylase, muscle form2.4.1.10.549
3mt817TGlycogen phosphorylase, muscle form2.4.1.10.536
2qn3F55Glycogen phosphorylase, muscle form2.4.1.10.527
2qn7HBZGlycogen phosphorylase, muscle form2.4.1.10.526
2qs3UBEGlutamate receptor ionotropic, kainate 1/0.492
3ai3NDPNADPH-sorbose reductase/0.492
2ojtUBAGlutamate receptor ionotropic, kainate 1/0.491
3o03NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase)/0.485
3mpt1GKMitogen-activated protein kinase 14/0.483
2w6pOA4Biotin carboxylase6.3.4.140.480
3g2hKOTGlycogen phosphorylase, muscle form2.4.1.10.480
3qt62P0Mevalonate diphosphate decarboxylase/0.479
5a3bAPRSIR2 family protein/0.479
2qrqS13Glycogen phosphorylase, muscle form2.4.1.10.478
2c31TZDOxalyl-CoA decarboxylase4.1.1.80.477
4qxr1YEStimulator of interferon genes protein/0.477
4dh60KNBeta-secretase 13.4.23.460.473
1dr3TAPDihydrofolate reductase1.5.1.30.471
1wngSAHDiphthine synthase/0.470
3fr8NDPKetol-acid reductoisomerase, chloroplastic1.1.1.860.470
3p62FMNPentaerythritol tetranitrate reductase/0.470
1i7pFADNADH-cytochrome b5 reductase 31.6.2.20.469
2b53D23Cyclin-dependent kinase 22.7.11.220.469
2ed3SAHDiphthine synthase/0.469
3lqfNADGalactitol dehydrogenase/0.469
1tqf32PBeta-secretase 13.4.23.460.468
4dbzNDPPutative ketoacyl reductase1.3.10.468
4xj43ATCyclic GMP-AMP synthase/0.468
1m78NDPDihydrofolate reductase1.5.1.30.467
1udbUFGUDP-glucose 4-epimerase5.1.3.20.467
4bfzZVZPantothenate kinase2.7.1.330.467
4z24FADPutative GMC-type oxidoreductase R13510.467
1h5qNAPNADP-dependent mannitol dehydrogenase1.1.1.1380.466
3toxNAPPutative oxidoreductase/0.466
2el0SAHDiphthine synthase/0.465
3evbSAHGenome polyprotein2.1.1.560.465
3gegNADShort-chain dehydrogenase/reductase SDR/0.465
4hp8NAP2-deoxy-D-gluconate 3-dehydrogenase/0.465
4jnkZHKL-lactate dehydrogenase A chain1.1.1.270.465
3il1B5DGlutamate receptor 2/0.463
4friDWABeta-secretase 13.4.23.460.463
3co93MSGenome polyprotein2.7.7.480.462
3cosNADAlcohol dehydrogenase 41.1.1.10.462
3dmeFADPutative conserved exported protein/0.462
1e3eNAIAlcohol dehydrogenase 41.1.1.10.461
1nupNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.461
2d1yNADOxidoreductase, short-chain dehydrogenase/reductase family/0.461
2dsiSAHDiphthine synthase/0.461
2hr8SAHDiphthine synthase/0.461
4anx534Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.461
4txzG2PCyclic GMP-AMP synthase/0.461
5a88ADPRiboflavin biosynthesis protein RibF2.7.1.260.461
2hutSAHDiphthine synthase/0.460
4blrUTPNTPase P4/0.460
4j7uNAPSepiapterin reductase1.1.1.1530.460
2ktdPUCProstaglandin-H2 D-isomerase5.3.99.20.459
2pncCLUPrimary amine oxidase, liver isozyme/0.459
3clsFADElectron transfer flavoprotein subunit alpha/0.459
3l7dDK5Glycogen phosphorylase, muscle form2.4.1.10.459
3s2v3HUGlutamate receptor ionotropic, kainate 1/0.459
3uylTYDProbable NDP-rhamnosyltransferase/0.459
1dr2TAPDihydrofolate reductase1.5.1.30.458
1tduDURThymidylate synthase/0.458
1u4oNDDL-lactate dehydrogenase1.1.1.270.458
3vv8B02Beta-secretase 13.4.23.460.458
4dptAGSMevalonate diphosphate decarboxylase/0.458
1gcoNADGlucose 1-dehydrogenase1.1.1.470.457
2g1o2IGRenin3.4.23.150.457
2ztvNADD(-)-3-hydroxybutyrate dehydrogenase/0.457
3dg8UMPBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.457
4frkDWDBeta-secretase 13.4.23.460.457
5f8eSAHPossible transcriptional regulatory protein/0.457
1lf3EH5Plasmepsin-23.4.23.390.456
2a94AP0L-lactate dehydrogenase1.1.1.270.456
2o1sTDP1-deoxy-D-xylulose-5-phosphate synthase2.2.1.70.456
2zjaACPATP-dependent DNA helicase Hel308/0.456
3em0CHDFatty acid-binding protein 6, ileal (gastrotropin)/0.456
3ingNDPHomoserine dehydrogenase related protein/0.456
3sc13S13-phosphoinositide-dependent protein kinase 12.7.11.10.456
1sguMK1Gag-Pol polyprotein3.4.23.160.455
2cej1AHPol protein/0.455
2hg1N5OEndoplasmin/0.455
2iodMYCDihydroflavonol 4-reductase1.1.1.2190.455
3cgdCOACoenzyme A disulfide reductase/0.455
4ckiADNProto-oncogene tyrosine-protein kinase receptor Ret2.7.10.10.455
4fj0NAP17beta-hydroxysteroid dehydrogenase/0.454
1hbvGANGag-Pol polyprotein/0.453
1kevNDPNADP-dependent isopropanol dehydrogenase1.1.1.800.453
1phePIYCamphor 5-monooxygenase1.14.15.10.453
2bkzSBCCyclin-dependent kinase 22.7.11.220.453
2y3sTIRTamL/0.453
3own3OWRenin3.4.23.150.453
4esoNAPPutative oxidoreductase/0.453
4im01FVSerine/threonine-protein kinase TBK12.7.11.10.453
1gveNAPAflatoxin B1 aldehyde reductase member 310.452
1z0dGDPRas-related protein Rab-5C/0.452
2pvhP19Casein kinase II subunit alpha2.7.11.10.452
4i1iNADMalate dehydrogenase/0.452
4uymVOR14-alpha sterol demethylase Cyp51B/0.452
1hsgMK1Gag-Pol polyprotein/0.451
2dxxSAHDiphthine synthase/0.451
2fgkATPAlpha-hemolysin translocation ATP-binding protein HlyB/0.451
2fznFADBifunctional protein PutA1.5.5.20.451
2os1BB2Peptide deformylase/0.451
3bv2P38Mitogen-activated protein kinase 14/0.451
3isjA8DPantothenate synthetase6.3.2.10.451
3ivgFG5Pantothenate synthetase6.3.2.10.451
3kfs3TLGag-Pol polyprotein/0.451
4iqlFMNEnoyl-(Acyl-carrier-protein) reductase II/0.451
5b1yNDP3-oxoacyl-[acyl-carrier-protein] reductase/0.451
1o0sNAINAD-dependent malic enzyme, mitochondrial1.1.1.380.450
1o97FADElectron transfer flavoprotein subunit alpha/0.450
1t2cNAIL-lactate dehydrogenase1.1.1.270.450
2dv3SAHDiphthine synthase/0.450
2jdtI5ScAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.450
3ai2NDPNADPH-sorbose reductase/0.450
4a802ANMajor pollen allergen Bet v 1-A/0.450
4djy0KRBeta-secretase 13.4.23.460.450
4dmmNAP3-oxoacyl-[acyl-carrier-protein] reductase/0.450
5cpbNADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.450
1xkvATPPhosphoenolpyruvate carboxykinase (ATP)/0.449
2c1bCQPcAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.449
3cukFADD-amino-acid oxidase1.4.3.30.449
3ocpCMPcGMP-dependent protein kinase 12.7.11.120.449
3ortAGSSerine/threonine protein kinase/0.449
4dfg0JVGag-Pol polyprotein3.4.23.160.449
4nd2A3DLactate dehydrogenase, adjacent gene encodes predicted malate dehydrogenase/0.449
4pl0ANPMicrocin-J25 export ATP-binding/permease protein McjD/0.449
4uwmFMN3,6-diketocamphane 1,6 monooxygenase1.14.130.449
1kh3ANPArgininosuccinate synthase/0.448
1xddAAYIntegrin alpha-L/0.448
2i0y5CNMacrophage colony-stimulating factor 1 receptor2.7.10.10.448
2v59LZKBiotin carboxylase6.3.4.140.448
2v5aLZLBiotin carboxylase6.3.4.140.448
2ylzFADPhenylacetone monooxygenase1.14.13.920.448
3a3gDLZLumazine protein/0.448
3aebFADSuccinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial/0.448
3r4b74TGag-Pol polyprotein/0.448
3vf30GSBeta-secretase 13.4.23.460.448
3zdiUGJGlycogen synthase kinase-3 beta2.7.11.260.448
4g9kFADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial1.6.5.90.448
4yjdFADD-amino-acid oxidase1.4.3.30.448
5hwsNAP2-dehydropantoate 2-reductase/0.448
1bdrIM1Gag-Pol polyprotein3.4.23.160.447
1cjkFOKAdenylate cyclase type 2/0.447
1cjkFOKAdenylate cyclase type 5/0.447
1jmgUMPThymidylate synthase/0.447
1rwbNADGlucose 1-dehydrogenase1.1.1.470.447
1xl5190Gag-Pol polyprotein3.4.23.160.447
1xs7MMIBeta-secretase 13.4.23.460.447
2zuiCAMCamphor 5-monooxygenase1.14.15.10.447
3b4yF42F420-dependent glucose-6-phosphate dehydrogenase/0.447
3h3t16HCollagen type IV alpha-3-binding protein/0.447
3hrfATP3-phosphoinositide-dependent protein kinase 12.7.11.10.447
3t6iNC9Endothiapepsin3.4.23.220.447
4eagATP5'-AMP-activated protein kinase subunit gamma-1/0.447
4opiFDAConserved Archaeal protein/0.447
4q1x017Gag-Pol polyprotein3.4.23.160.447
4rqkATP3-phosphoinositide-dependent protein kinase 12.7.11.10.447
5jlaNADPutative short-chain dehydrogenase/reductase/0.447
4djhJDCKappa-type opioid receptor/0.447
1rp7TZDPyruvate dehydrogenase E1 component1.2.4.10.446
1u2yGOXPancreatic alpha-amylase/0.446
1u7tNAD3-hydroxyacyl-CoA dehydrogenase type-21.1.1.350.446
2hs1017Protease/0.446
3o9iA61Gag-Pol polyprotein/0.446
3omuIBDHeat shock protein 83/0.446
3zhyFM61-deoxy-D-xylulose 5-phosphate reductoisomerase/0.446
4djaFAD(6-4) photolyase/0.446
1a9yUPGUDP-glucose 4-epimerase5.1.3.20.445
1bil0IURenin3.4.23.150.445
1g1aNADdTDP-glucose 4,6-dehydratase/0.445
1lbcCYZGlutamate receptor 2/0.445
1rfuADPPyridoxal kinase2.7.1.350.445
1x27ASP_TYR_VAL_HIS_PTRTyrosine-protein kinase Lck2.7.10.20.445
2c29NAPDihydroflavonol 4-reductase/0.445
2fxv5GPXanthine phosphoribosyltransferase2.4.2.220.445
2q7vFADThioredoxin reductase/0.445
2xfsJ01Uncharacterized protein/0.445
2zkjADP[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 4, mitochondrial2.7.11.20.445
3i5zZ48Mitogen-activated protein kinase 12.7.11.240.445
3mxdK53Gag-Pol polyprotein3.4.23.160.445
3qvsNADMyo-inositol-1-phosphate synthase (Ino1)/0.445
3qw4U5POrotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative/0.445
4dreNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.445
4gk3L87Ephrin type-A receptor 32.7.10.10.445
4iwq1FVSerine/threonine-protein kinase TBK12.7.11.10.445
4jnkNAIL-lactate dehydrogenase A chain1.1.1.270.445
5d3qGDPDynamin-13.6.5.50.445
5hwqCAAHydroxymethylglutaryl-CoA synthase/0.445
1a940Q4Gag-Pol polyprotein3.4.23.160.444
1b5tFAD5,10-methylenetetrahydrofolate reductase1.5.1.200.444
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.444
1mrwK57Gag-Pol polyprotein3.4.23.160.444
1tehNADAlcohol dehydrogenase class-31.1.1.10.444
1vbiNADMalate/L-lactate dehydrogenase family protein/0.444
2a1hGBNBranched-chain-amino-acid aminotransferase, mitochondrial2.6.1.420.444
2a5kAZPReplicase polyprotein 1ab3.4.220.444
2g8yNADHydroxycarboxylate dehydrogenase B/0.444
2pchSAHDiphthine synthase/0.444
3h3r14HCollagen type IV alpha-3-binding protein/0.444
3l63CAMCamphor 5-monooxygenase1.14.15.10.444
3mtfA3FActivin receptor type-12.7.11.300.444
3vydVYDRenin3.4.23.150.444
4ambDUDPutative glycosyl transferase/0.444
4egh0OYHeat shock protein HSP 90-alpha/0.444
4j0v1H7Beta-secretase 13.4.23.460.444
4u7wNDPMxaA/0.444
1b5eDCMDeoxycytidylate 5-hydroxymethyltransferase2.1.2.80.443
1cbfSAHCobalt-precorrin-4 C(11)-methyltransferase2.1.1.2710.443
1geeNADGlucose 1-dehydrogenase1.1.1.470.443
1gg5FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.443
2iyfERYOleandomycin glycosyltransferase2.4.10.443
3bheBZNGag-Pol polyprotein3.4.23.160.443
3cgbCOACoenzyme A disulfide reductase/0.443
3e8nVRADual specificity mitogen-activated protein kinase kinase 12.7.12.20.443
3fp0FP015-O-acetyltransferase/0.443
3ge6FMNNitroreductase/0.443
3ho2N323-oxoacyl-[acyl-carrier-protein] synthase 22.3.1.1790.443
3o0qADNVitamin B12-dependent ribonucleotide reductase/0.443
3o9dK19Pol polyprotein/0.443
3up5FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.443
4du82P0Mevalonate diphosphate decarboxylase/0.443
4eutBX7Serine/threonine-protein kinase TBK12.7.11.10.443
4fv7E94Mitogen-activated protein kinase 12.7.11.240.443
4g74FADRotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial1.6.5.90.443
4ji91M3Tyrosine-protein kinase JAK2/0.443
4kvzSAHPtnL protein/0.443
5idwNAPShort-chain dehydrogenase/reductase SDR/0.443
1f20FADNitric oxide synthase, brain1.14.13.390.442
1k2c0Q4Gag-Pol polyprotein3.4.23.160.442
1kvsUPGUDP-glucose 4-epimerase5.1.3.20.442
1xelUPGUDP-glucose 4-epimerase5.1.3.20.442
1zemNADXylitol dehydrogenase/0.442
2c20NADUDP-glucose 4-epimerase/0.442
2jdsL20cAMP-dependent protein kinase catalytic subunit alpha2.7.11.110.442
2vwqNAPGlucose 1-dehydrogenase/0.442
3o96IQORAC-alpha serine/threonine-protein kinase2.7.11.10.442
3oqkS52Renin3.4.23.150.442
3uicNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.442
3wrmCAMCamphor 5-monooxygenase1.14.15.10.442
4cpdNADAlcohol dehydrogenase/0.442
4f650S9Fibroblast growth factor receptor 1/0.442
4i1c1BEBeta-secretase 13.4.23.460.442
4i6aHMG3-hydroxy-3-methylglutaryl-coenzyme A reductase1.1.1.880.442
4i8zG08Gag-Pol polyprotein3.4.23.160.442
4r81FMNPredicted NADH dehydrogenase/0.442
4y9qC2EUncharacterized protein/0.442
4z0g5GPInosine-5'-monophosphate dehydrogenase/0.442
1fcbFMNCytochrome b2, mitochondrial1.1.2.30.441
1ndhFADNADH-cytochrome b5 reductase 31.6.2.20.441
1pq944BOxysterols receptor LXR-beta/0.441
1t7kBH0Gag-Pol polyprotein3.4.23.160.441
2b7aIZATyrosine-protein kinase JAK2/0.441
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.441
2dphNADFormaldehyde dismutase/0.441
2eh5SAHDiphthine synthase/0.441
2eklNADD-3-phosphoglycerate dehydrogenase/0.441
2y9qANPMitogen-activated protein kinase 12.7.11.240.441
3biy01KHistone acetyltransferase p300/0.441
3coy53HPantothenate synthetase6.3.2.10.441
3ixp834Ecdysone receptor/0.441
3vx4ATPPutative ABC transporter, ATP-binding protein ComA/0.441
3wbfNAPMeso-diaminopimelate D-dehydrogenase/0.441
4fuj1U9Urokinase-type plasminogen activator3.4.21.730.441
4hbgNDP3-oxoacyl-[acyl-carrier-protein] reductase1.1.1.1000.441
4iwo1H4Serine/threonine-protein kinase TBK12.7.11.10.441
4nbtNAD3-oxoacyl-[acyl-carrier-protein] reductase/0.441
4twrNADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase/0.441
4yagNAIC alpha-dehydrogenase/0.441
5cp4CAMCamphor 5-monooxygenase1.14.15.10.441
1a59COA2-methylcitrate synthase/0.440
1cs4FOKAdenylate cyclase type 2/0.440
1cs4FOKAdenylate cyclase type 5/0.440
1ma0NADAlcohol dehydrogenase class-31.1.1.10.440
1s20NAD2,3-diketo-L-gulonate reductase1.1.1.1300.440
1xe55FEPlasmepsin-23.4.23.390.440
2itqITQEpidermal growth factor receptor2.7.10.10.440
2p20PRXAcetyl-coenzyme A synthetase/0.440
2pk3A2RGDP-6-deoxy-D-mannose reductase/0.440
2q1sNAIPutative nucleotide sugar epimerase/ dehydratase/0.440
3dxmN24Actin-related protein 3/0.440
3jswJARHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.440
3o9hK2EGag-Pol polyprotein/0.440
3tog079Gag-Pol polyprotein2.7.7.490.440
4a06ATP3-phosphoinositide-dependent protein kinase 12.7.11.10.440
4el0D1KGlycogen phosphorylase, muscle form2.4.1.10.440
4o8aFADBifunctional protein PutA1.2.1.880.440
4rvnCOAPhenylacetate-coenzyme A ligase/0.440
4w6z8IDAlcohol dehydrogenase 11.1.1.10.440
4xsvCTPEthanolamine-phosphate cytidylyltransferase2.7.7.140.440