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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3fznD7KBenzoylformate decarboxylase4.1.1.7

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
3fznD7KBenzoylformate decarboxylase4.1.1.71.000
1mczTDPBenzoylformate decarboxylase4.1.1.70.511
4k9oTPPBenzoylformate decarboxylase4.1.1.70.498
4mprTPPBenzoylformate decarboxylase4.1.1.70.487
4jubTPPBenzoylformate decarboxylase4.1.1.70.478
4k9nTZDBenzoylformate decarboxylase4.1.1.70.477
4gm4TZDBenzoylformate decarboxylase4.1.1.70.465
1mczRMNBenzoylformate decarboxylase4.1.1.70.452
4jufTPPBenzoylformate decarboxylase4.1.1.70.452
1po7TZDBenzoylformate decarboxylase4.1.1.70.445
4gg1TZDBenzoylformate decarboxylase4.1.1.70.442
4k9pTPPBenzoylformate decarboxylase4.1.1.70.442