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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3fr28CAFatty acid-binding protein, adipocyte

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3fr28CAFatty acid-binding protein, adipocyte/1.000
3fr4F8AFatty acid-binding protein, adipocyte/0.800
1towCRZFatty acid-binding protein, adipocyte/0.668
3fr5I4AFatty acid-binding protein, adipocyte/0.643
1touB1VFatty acid-binding protein, adipocyte/0.624
3hk1B64Fatty acid-binding protein, adipocyte/0.586
2nnqT4BFatty acid-binding protein, adipocyte/0.570
1u2gAPRNAD(P) transhydrogenase subunit alpha part 11.6.1.20.466
3otwCOAPhosphopantetheine adenylyltransferase/0.464
2chx090Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.445
4biiPYWEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.443