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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3fr0AJBGlucokinase2.7.1.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3fr0AJBGlucokinase2.7.1.21.000
3a0iAJIGlucokinase2.7.1.20.656
4mleVO1Glucokinase2.7.1.20.605
3vey0H5Glucokinase2.7.1.20.589
4mlhVO2Glucokinase2.7.1.20.581
3id8MRKGlucokinase2.7.1.20.557
1v4sMRKGlucokinase2.7.1.20.541
4l3q926Glucokinase2.7.1.20.531
3f9mMRKGlucokinase2.7.1.20.506
2ath3EAPeroxisome proliferator-activated receptor gamma/0.472
3imxB84Glucokinase2.7.1.20.462
3vjhJ35Peroxisome proliferator-activated receptor gamma/0.462
1fm6BRLPeroxisome proliferator-activated receptor gamma/0.457
4q72FADBifunctional protein PutA/0.454
1w87NAPFerredoxin--NADP reductase1.18.1.20.451
3wmxNADNAD dependent epimerase/dehydratase/0.450
2gtk208Peroxisome proliferator-activated receptor gamma/0.448
2znnS44Peroxisome proliferator-activated receptor alpha/0.448
3h1vTK1Glucokinase2.7.1.20.448
3kduNKSPeroxisome proliferator-activated receptor alpha/0.448
2b0m201Dihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.447
2f4bEHAPeroxisome proliferator-activated receptor gamma/0.447
2prh238Dihydroorotate dehydrogenase (quinone), mitochondrial1.3.5.20.447
2znoS44Peroxisome proliferator-activated receptor gamma/0.447
4hee14RPeroxisome proliferator-activated receptor gamma/0.445
4hfmNAP2-alkenal reductase (NADP(+)-dependent)/0.445
4q73FADBifunctional protein PutA/0.445
3cs8BRLPeroxisome proliferator-activated receptor gamma/0.444
4b8uIBK3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase4.2.1.590.444
4gxs0YSGlutamate receptor 2/0.444
5cmsAPRO-acetyl-ADP-ribose deacetylase/0.444
4b7xNAPProbable oxidoreductase/0.443
1zgyBRLPeroxisome proliferator-activated receptor gamma/0.441
3kytHC2Nuclear receptor ROR-gamma/0.441
3vn2TLSPeroxisome proliferator-activated receptor gamma/0.441
4xldBRLPeroxisome proliferator-activated receptor gamma/0.441
1fm9570Peroxisome proliferator-activated receptor gamma/0.440
4q71FADBifunctional protein PutA/0.440