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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3fnfJPMEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.9

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3fnfJPMEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.91.000
1p44GEQEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.514
2b365PPEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.496
5cp8TCUEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.495
2b378PSEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.491
3fnhJPJEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.485
4tzk641Enoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.484
2b35TCLEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.478
4trj665Enoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.476
3uic09TEnoyl-[acyl-carrier-protein] reductase [NADH]/0.467
1y60H4M5,6,7,8-tetrahydromethanopterin hydro-lyase4.2.1.1470.464
4tzt468Enoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.461
4j6bPLOCytochrome P450 monooxygenase/0.454
1bvrTHTEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.451
3tdaPN0Cytochrome P450 2D6/0.443
5coqTCUEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.443